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Report for CCDS51286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51286.1 Public Mus musculus 4 Cfap57 23 108 98 CCDS HistoryNCBI Gene:68625Re-query CCDS DB by CCDS ID:51286.1Re-query CCDS DB by GeneID:68625See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071972.10 ENSMUSP00000071863.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071972.10Link to Ensembl Protein Viewer:ENSMUSP00000071863.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071972Re-query CCDS DB by Protein ID:ENSMUSP00000071863
Original member Current member EBI ENSMUST00000081921.6 ENSMUSP00000080592.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081921.6Link to Ensembl Protein Viewer:ENSMUSP00000080592.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081921Re-query CCDS DB by Protein ID:ENSMUSP00000080592
Original member Current member NCBI NM_026789.5 NP_081065.2 Accepted alive Link to Nucleotide Sequence:NM_026789.5Link to Protein Sequence:NP_081065.2Re-query CCDS DB by Nucleotide ID:NM_026789Re-query CCDS DB by Protein ID:NP_081065Link to BLAST:NP_081065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081065.2 1249 Q9D180 1249 100% 0 0

Chromosomal Locations for CCDS 51286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118554696 118554910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118561795 118561927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118569349 118569492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118569582 118569716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118571645 118571761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118576574 118576717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118579336 118579494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118580990 118581163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118581799 118581989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118582850 118582943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118584626 118584781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118588976 118589137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118592998 118593171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118595753 118595965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118598957 118599070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118599826 118599991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118600733 118600872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118606536 118606688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118610573 118610780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118612924 118613207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118614707 118615023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118620249 118620405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3750 nt):
ATGTCCACCGTGGTAGCTCAGGCGCTTCATGTTTTTGGTCTTCGGCCTCACGTGACCAACAATGTCTTCT
TCTTCGATGAACAGATCATTATATTTCCTTCAGGAAATCACTGTGTGAAGTACAATATAGATCAGAAATG
GCAAAAATTCATTGCAGGCTCAGACAAGAGTCAGGGCATGCTGGCTTTGGCCATCAGTCCCAATCGGCGA
TATCTCGCTATCTCCGAGACTGTGCAAGAAAAACCGGCCGTCACTATTTATGAACTCTCATCCATCCCTT
GCCGGAAGCGCAAAGTCCTGAATAATTTTGATTTCCAAGTTCAAAAGTTTACCAGCATGGCTTTTTCTCC
AGACTCTAAATACCTGCTGACACAGACGTCACCTCCAGACTCAAACCTCGTCTATTGGCTGTGGGAAAAG
CAGAAAGTCATGGCCATTATTAAAGCTGATAGTCAAAACAACCCCATCTACCAGGTTAGCATCAGTTCCC
AGGATAATAGTCAAGTGTGTATTACTGGAAGTGGGGTATTTAAACTTCTCCGCTTTGCTGAAGGAACCCT
AAAGCAAATCAATTTCCAGAGGGGAGAATCTTCAAACTACCTAGCCCACGCCTGGGTGTCTGAAGACAGG
GTCATTGTTGGCACTGACACCGGCAAACTCTTCCTCTTTGAATCTGGAGATCAGCGCTGGGAGACAAGCA
TAATGGTCAAGGAGTCTACTAGCTCCAGGAGCCTGGAGGTCATTCAAGAGTCAGAGAGCCTGATAGAGTT
TCCCCCACTCAGCTCCCCGGTCTCCTCCGTTGAAAGGATGGATATAACCACTAACACCCAACAACAGGCC
ATGCCCCAGGTGTTTGCCATCGCAGCCTATTCAAAGGGATTTGCCTGCTCTGCGGGGCCTGGAAGAGTGC
TGCTGTTTGAGAAAGTGGAAGAGAAGGACTTTTACCGGGAAAGCAGGGAAATCCGGATCCCCACAGACCA
ACAAAGCAATGACCCAAGTCAGTCAGACAAGCAGGATGTCCTGTGCCTGTGCTTCAGCCCATCAGAAGAA
ACCCTGATCGCCAGCACCAACAAGAACCAGCTCTACTCCATCACCATGTCCCTGACGGAGATCAGCAAGG
GAGAGGCTGCCCACTTCGAGTACCTGCTGTACCCATTGCACTCAGCATCCATCACTGGTCTCGATACCTG
CATCCGAAAACCCCTCATTGCCACCTGCTCTCTGGATCGCTCCGTCCGCATCTGGAATTACGAATCAAAC
ACACTGGAGCTATATAAGGAATACCAAGAAGAGGCCTACACAGTGAGCCTTCACCCCTCTGGACACTACA
TTGTGGTAGGGTTTGCTGACAAACTGCGCCTTATGAATCTGCTCATTGATGACATCCGTCCTTTCAAAGA
ATATTCTGTCAGAGGGTGCAAAGAGTGCTCCTTTAGCAATGGAGGTCACCTGTTTGCTGCAGTCAACGGA
AATGTGATTCACATCTTCACCACCACGAGCCTGGAGAACATCAATATTTTGAAAGGCCACACAGGGAAGA
TCCGTTCACTCGTGTGGAACTTAGATGACAGCAAACTGGTTTCTGCTGGAACAGATGGTGCTGTGTATGA
ATGGAATCTGTCCACAGGGAAGAGAGAGACGGAGTGTGTGCTTAAGTCCTGTAGCTACAACTCGGTCACC
ACCTCCCCTGATGCCAAAGTTATCTTTGCTGTCGGATCAGACCAGACTCTCAAGGAGATTTCAGATTCTT
TGATCCTCCGAGAGATACCAGCATTTGACGTCATCTACACGTCCATCACCATCTCACATTCTGGGCGCAT
GATATTTGTGGGCACTTCCGTGGGGACTATCCGTGCCATGAAGTACCCGCTGTCTTTGCAGAAAGAATAC
AATGAGTACCAGGCTCATGCTGGCCCTGTCATGAAGATGCTGCTCACCTTTGACGACCAGTTCCTGCTGA
CAGTTGGTGAGGATGGCTGCCTGTTCACCTGGAAGGTCTTTGATAAGGATGGCCGGGGAATCAAACGAGA
GAGGGAGGTGGGCTTTGCTGAAGAGGTGCTCGTGACTAAGACAGACATGGAAGAGAAGGCTCAGATTATG
CTGGAGCTGAAGACTCGTGTAGAGGAACTGAAGATGGAGAATGAGTATCAGCTCCGGCTGAAGGACATGA
ACTACACGGAGAAGATCAAGGAGCTGACGGACAAGTTCATCCAGGAGATGGAATCCTTAAAGACGAAGAA
CCAGGTGTTAAAAACAGAGAAAGAAAAACAGGACATCAGTCACCGAGAGCGCTTAGAGGAACTCGTAGAC
AAACAGACCCGGGAGCTGCAAGACCTGGAATGCTGTAACAACCAGAAGCTGCTCCTTGAATATGAGAAGT
ACCAAGAGCTGCAGCTCAAGTCCCAGAGGATGCAGGAGGAGTACGAAAAGCAGCTCCGGGATAACGATGA
GACGAAGAGCCAAGCCCTGGAGGAGCTGACCGAGTTCTATGAGGCCAAACTCCAGGAGAAAACTGGCCTT
CTAGAGGAGGCACAGGAAGATGTCCGACAGCAGCTTCGGGAATTCGAGGAAACCAAGAAGCAGATTGAAG
AAGATGAAGACAGGGAGATCCAAGACATCAAAACCAAGTACGAGAGGAAGCTTAGGGATGAGAAGGAGTC
TAACCTTCGACTCAAGGGAGAAACGGGCATCATGAGGAAGAAGTTCAGCAGCCTGCAGAAGGAGATCGAA
GAGCGCACCAACGACATCGAGCTCCTCAAGTCGGAGCAGATGAAGCTGCAGGGCATCATCAGATCCCTGG
AGAAAGACATCCAAGGGCTCAAGAGAGAGATCCAGGAGAGGGACGAGACCATTCAAGACAAGGAGAAGCG
AATTTATGATCTGAAGAAGAAGAACCAAGAGCTGGAGAAATTCAAGTTTGTCCTTGACTACAAAATAAAG
GAGCTGAAGAAGCAAATAGAACCGAGGGAGAACGAGATCAAAGTGATGAAAGAGCAGATCCAGGAGATGG
AAGCCGAGCTGGAGCGTTTCCATAAACAGAACACGCAACTGGAGCTGAACATCACAGAACTGTTGCAGAA
ACTGCGAGCTACGGATCAGGAGATGCGCAAGGAGCAGCAGAAGGAACGGGATCTGGAAGCGCTGGTCCGA
CGCTTCAAGACAGACCTTCACAACTGCGTGGCGTACATCCAGGAACCCGGGCTGCTGAAGGAGAAGATCC
GTGGCCTCTTTGAGAAGTACGTGCAGCGGGCAGACATGGTGGAGATTGCAGGGTTGAACTCAGACCTGCA
ACAGGAGTACGCCCGCCAGCGGGAACACCTGGAGAGGAACCTTGCCACGCTCAAGAAGAAAGTGATCAAG
GAGGGTGAGCTGCATCGCACCGACTATGTCCGCATCATGCAGGAAAATGTCTCTCTGATCAAAGAAATTA
ATGAGCTCCGCAGGGAGCTGAAGTTAACCCGCTCCCAAATCTATGACCTTGAATCGGCCCTGAAAGTATC
CAAGAAGACGCGCTCACAAGAAGTTCCAGAGTCAGTGATAAGCAAGGACGTAGTCGGCAGCACCTCTACT
ATGAGGCTGAACGAACAGGAGGAAACCGGGAGAATCATCGAGATGCAACGTCTGGAAATCCGCCGCCTCA
GAGACCAGATCCAAGAGCAGGAGCAGGTCCCAGGCTTCCACACCATTGCCGGAGTTCGGCTTCCTTCCAT
CGTCGACTCAGATGTGGATTTTGAAGTGCACACCAAGTGA

Translation (1249 aa):
MSTVVAQALHVFGLRPHVTNNVFFFDEQIIIFPSGNHCVKYNIDQKWQKFIAGSDKSQGMLALAISPNRR
YLAISETVQEKPAVTIYELSSIPCRKRKVLNNFDFQVQKFTSMAFSPDSKYLLTQTSPPDSNLVYWLWEK
QKVMAIIKADSQNNPIYQVSISSQDNSQVCITGSGVFKLLRFAEGTLKQINFQRGESSNYLAHAWVSEDR
VIVGTDTGKLFLFESGDQRWETSIMVKESTSSRSLEVIQESESLIEFPPLSSPVSSVERMDITTNTQQQA
MPQVFAIAAYSKGFACSAGPGRVLLFEKVEEKDFYRESREIRIPTDQQSNDPSQSDKQDVLCLCFSPSEE
TLIASTNKNQLYSITMSLTEISKGEAAHFEYLLYPLHSASITGLDTCIRKPLIATCSLDRSVRIWNYESN
TLELYKEYQEEAYTVSLHPSGHYIVVGFADKLRLMNLLIDDIRPFKEYSVRGCKECSFSNGGHLFAAVNG
NVIHIFTTTSLENINILKGHTGKIRSLVWNLDDSKLVSAGTDGAVYEWNLSTGKRETECVLKSCSYNSVT
TSPDAKVIFAVGSDQTLKEISDSLILREIPAFDVIYTSITISHSGRMIFVGTSVGTIRAMKYPLSLQKEY
NEYQAHAGPVMKMLLTFDDQFLLTVGEDGCLFTWKVFDKDGRGIKREREVGFAEEVLVTKTDMEEKAQIM
LELKTRVEELKMENEYQLRLKDMNYTEKIKELTDKFIQEMESLKTKNQVLKTEKEKQDISHRERLEELVD
KQTRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTGL
LEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYERKLRDEKESNLRLKGETGIMRKKFSSLQKEIE
ERTNDIELLKSEQMKLQGIIRSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIK
ELKKQIEPRENEIKVMKEQIQEMEAELERFHKQNTQLELNITELLQKLRATDQEMRKEQQKERDLEALVR
RFKTDLHNCVAYIQEPGLLKEKIRGLFEKYVQRADMVEIAGLNSDLQQEYARQREHLERNLATLKKKVIK
EGELHRTDYVRIMQENVSLIKEINELRRELKLTRSQIYDLESALKVSKKTRSQEVPESVISKDVVGSTST
MRLNEQEETGRIIEMQRLEIRRLRDQIQEQEQVPGFHTIAGVRLPSIVDSDVDFEVHTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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