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Report for CCDS51238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51238.1 Public Mus musculus 4 Dnajc6 23 108 98 CCDS HistoryNCBI Gene:72685Re-query CCDS DB by CCDS ID:51238.1Re-query CCDS DB by GeneID:72685See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106933.1 ENSMUSP00000102546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106933.1Link to Ensembl Protein Viewer:ENSMUSP00000102546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106933Re-query CCDS DB by Protein ID:ENSMUSP00000102546
Original member NCBI NM_001164583.1 NP_001158055.1 Updated not alive Link to Nucleotide Sequence:NM_001164583.1Link to Protein Sequence:NP_001158055.1Re-query CCDS DB by Nucleotide ID:NM_001164583Re-query CCDS DB by Protein ID:NP_001158055
Current member NCBI NM_001164583.2 NP_001158055.1 Accepted alive Link to Nucleotide Sequence:NM_001164583.2Link to Protein Sequence:NP_001158055.1Re-query CCDS DB by Nucleotide ID:NM_001164583Re-query CCDS DB by Protein ID:NP_001158055Link to BLAST:NP_001158055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158055.1 968 Q80TZ3-3 968 100% 0 0

Chromosomal Locations for CCDS 51238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101550669 101550855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101597801 101597951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101598951 101599000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101599095 101599243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101606589 101606711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101611225 101611358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101612862 101613056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101614173 101614290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101615581 101615660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616486 101616679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101616785 101616865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101618394 101618828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101623661 101623795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101625693 101625761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101628037 101628156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101634991 101635254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101636758 101636900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101639266 101639442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101640472 101640573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGAGCCTCCTCGGGAGCTACCGGAAAAAGACCAGCAGCGATGGTTATGAATCTTTGCAGCTGGTGGACA
GTCACGGGGACTCGAGCGCACGGGGCGCGGCGGCTGGCACGCAGAGGGCGACCGCGGGCGCGGTGCGTAG
TCCCGCCCGGCAGCCTCCGCACCGCGCCAGCACCACGGACAGCTCAGGTGCCTCGTCTCCAGACATGGAG
CCCAGCTATGGGGGAGGCCTTTTTGACATGGTGAAAGGCGGTGCAGGGAGGCTATTCAGTAACCTGAAGG
ACAACTTGAAAGACACTCTCAAAGATACATCCTCCAGGGTCATCCAGTCTGTTAGCAGCTACACAAAGGG
AGACCTAGACTTTACTTACGTCACCTCCAGGATTATCGTGATGTCCTTTCCTGTGGATAGTGTTGACATA
GGATTCAGGAATCAGGTTGATGACATCCGTAGCTTTTTGGATTCCAGACATCTTGACCACTACACAGTAT
ACAACTTGTCACCCAAGTCTTACCGAACTGCCAAGTTCCACAGCCGGGTCTCAGAGTGCAGTTGGCCCAT
CAGGCAGGCTCCAAGTCTACACAACCTGTTTGCTGTGTGTAGGAATATGTATAACTGGCTACTGCAGAAC
CCCAAAAATGTCTGTGTTGTCCACTGCTTGGATGGACGGGCCGCGTCGTCAATCCTGGTTGGTGCTATGT
TCATTTTCTGTAATCTCTACTCCACGCCTGGCCCTGCTGTTCGATTACTCTACGCAAAGCGACCAGGAAT
TGGACTGTCTCCGTCTCACAGGAGGTACTTAGGCTACATGTGCGACCTACTTGCAGATAAGCCCTACCGC
CCTCACTTCAAGCCACTCACGATCAAGGCAATCACTGTCAGCCCAGTTCCCTTCTTCAATAAGCAGAGAA
ATGGGTGCCGCCCTTACTGTGACGTTCTGATTGGAGAAACTAAAATATATTCAACGTGCACAGACTTTGA
ACGAATGAAAGAATACCGTGTCCAAGATGGGAAAATCTTCATCCCTCTGAACATCACAGTCCAAGGTGAT
GTCATCGTTTCCATGTACCACTTGCGGTCAACCATCGGGAGCCGGCTGCAGGCGAAGGTGACCAACACAC
AGATATTCCAGCTCCAGTTTCATTCTGGGTTTATACCACTGGACACGACAGTTTTAAAGTTCACCAAGCC
TGAGCTGGATGCATGTGATGTACCAGAAAAATATCCTCAGCTGTTCCAAGTGACACTGGATATAGAAGTC
CAGCCCCAAGACAAAGTGATCGACTTAACTCCACCATGGGAACACTACTGCACAAAAGATGTGAACCCCA
GCATCCTCTTCTCCTCTCAGCAGGAGCATCAGGACACTCTGGCCTTAGGGGGTCAGGCTCCAGCCGATCT
CCCACCAGACCATCCCAGGAATCTTGGGCAAGGAGGCTTCTTTGCCTCTCTCTGTTGGCAAGATCAGAAA
TCAGAGAAGTCACGCTGTGAGGAGGACCACGCTGCCCTGGTGAATCAGGAAAGTGAGCAGTCAGATGATG
AGCTACTGACTCTCTCCAGCCCCCATGGCAATGCAGAGGGTGATAAGCCTCATGGAGCCAAGAAGCCAGG
CAAAAAGCAGCAGGAGCCAGCTGCGCCTCCTCCCCCAGAGGAAGTGGACCTCCTGGGCCTGGAAGGGTCT
GATGTGAGCACGAACTTCTCTTCCTTGGCAGCTCCTCCCAGCAATTCTGAGTTGCTGAGTGACCTGTTTG
GGGGTGTAGGTGCCACAGGTCCTGCTCAGGCAGGACAGGCTGGGGTAGAAGATGTGTTTCATCCTAGTGG
ACCTGTGTCTGCACAGTCCACACCGCGCCGAACCGCCACCTCCGCCTCTGCATCGCCAACCCTAAGAGTG
GGAGAAGGTGCCACCTTTGACCCTTTTGGAGCCCCTGCTAAGCCACCAGGTCAGGATTTGTTGGGCTCCT
TTCTAAACACATCCAGTGCTTCTAGCGACCCCTTTCTGCAGCCCACGAGAAGCCCTTCCCCTACAGTGCA
TGCTTCTAGTACTCCTGCTGTGAACATCCAGCCCGACATTGCTGGAGGTTGGGACTGGCACACCAAACCA
GGAGGTTTTGGAATGGGGAGCAAATCCGCTGCCACCAGCCCGACAGGCTCATCACATGGCACCCCCACCC
ATCAGAGCAAGCCCCAGACTCTGGATCCCTTCGCTGACCTGGGGACACTAGGTAGCTCTTCATTTGCCAG
CAAACCTACCACCCCAACTGGATTGGGTGGAGGATTTCCACCTCTCAGCTCACCACAGAAAGCATCCCCC
CAGCCAATGGGTGGAGGGTGGCAGCAGCCAGCCGGCTACAACTGGCAGCAGACACAGTCTAAGCCACAGT
CCAGTATGCCTCACTCCTCCCCTCAGAACCGACCCAATTACAACGTGAGCTTCTCGGCTATGCCTGCAGG
GCAGAGCGAACGTGGAAAAGGATCTACTAACTTGGAAGGGAAACAAAAGGCTGCTGACTTTGAAGATCTG
CTTTCTAGTCAAGGCTTCAATGCACACAAAGACAAAAAGGGGCCTCGAACAATAGCTGAGATGAGAAAGG
AGGAGATGGCTAAGGAAATGGATCCTGAAAAACTAAAGATCCTGGAGTGGATAGAGGGCAAAGAGAGAAA
CATCAGAGCTCTGCTTTCCACAATGCACACCGTGCTGTGGGCTGGGGAGACCAAATGGAAACCCGTGGGC
ATGGCGGATCTGGTGACGCCGGAGCAAGTGAAGAAGGTGTACAGGAGGGCTGTGCTAGTGGTGCACCCTG
ACAAGGCAACTGGGCAACCCTATGAACAATACGCAAAGATGATTTTCATGGAGCTAAATGATGCCTGGTC
TGAATTTGAAAACCAAGGCCAAAAGCCCTTGTATTAA

Translation (968 aa):
MSLLGSYRKKTSSDGYESLQLVDSHGDSSARGAAAGTQRATAGAVRSPARQPPHRASTTDSSGASSPDME
PSYGGGLFDMVKGGAGRLFSNLKDNLKDTLKDTSSRVIQSVSSYTKGDLDFTYVTSRIIVMSFPVDSVDI
GFRNQVDDIRSFLDSRHLDHYTVYNLSPKSYRTAKFHSRVSECSWPIRQAPSLHNLFAVCRNMYNWLLQN
PKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLLADKPYR
PHFKPLTIKAITVSPVPFFNKQRNGCRPYCDVLIGETKIYSTCTDFERMKEYRVQDGKIFIPLNITVQGD
VIVSMYHLRSTIGSRLQAKVTNTQIFQLQFHSGFIPLDTTVLKFTKPELDACDVPEKYPQLFQVTLDIEV
QPQDKVIDLTPPWEHYCTKDVNPSILFSSQQEHQDTLALGGQAPADLPPDHPRNLGQGGFFASLCWQDQK
SEKSRCEEDHAALVNQESEQSDDELLTLSSPHGNAEGDKPHGAKKPGKKQQEPAAPPPPEEVDLLGLEGS
DVSTNFSSLAAPPSNSELLSDLFGGVGATGPAQAGQAGVEDVFHPSGPVSAQSTPRRTATSASASPTLRV
GEGATFDPFGAPAKPPGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDIAGGWDWHTKP
GGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASP
QPMGGGWQQPAGYNWQQTQSKPQSSMPHSSPQNRPNYNVSFSAMPAGQSERGKGSTNLEGKQKAADFEDL
LSSQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVG
MADLVTPEQVKKVYRRAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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