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Report for CCDS51233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51233.1 Public Mus musculus 4 Fggy 23 108 98 CCDS HistoryNCBI Gene:75578Re-query CCDS DB by CCDS ID:51233.1Re-query CCDS DB by GeneID:75578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079223.10 ENSMUSP00000078216.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079223.10Link to Ensembl Protein Viewer:ENSMUSP00000078216.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079223Re-query CCDS DB by Protein ID:ENSMUSP00000078216
Original member Current member NCBI NM_001113412.1 NP_001106883.1 Accepted alive Link to Nucleotide Sequence:NM_001113412.1Link to Protein Sequence:NP_001106883.1Re-query CCDS DB by Nucleotide ID:NM_001113412Re-query CCDS DB by Protein ID:NP_001106883Link to BLAST:NP_001106883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106883.1 552 A2AJL3-1 552 100% 0 0

Chromosomal Locations for CCDS 51233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 95585244 95585447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95597623 95597734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95600965 95601116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95623481 95623569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95696960 95697075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95738789 95738917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95769426 95769529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95800557 95800664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95812108 95812169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95821978 95822125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95837585 95837659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95844073 95844193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95849582 95849676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95922925 95922986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95926723 95926804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGATGTCTGGCAGAGACCAGGAACCAAGTCGCTACTATGTGGGCATCGATGTGGGAACAGGTAGTGTCC
GTGCGGCTCTAGTGGACCAGAGAGGGCTCCTTTTGGCTTTCGCAGAGCAGCCAATTAAGAAGTGGGAGCC
TCAATTCAACCACCACGAGCAGTCCTCAGAGGATATCTGGGCGGCATGCTGCCTTGTCACAAAGGAAGTT
GTTCAAGGGATTGATGCACATCGAATCCGAGGACTTGGTTTTGATGCCACGTGTTCTCTGGTTGTCTTGG
ATAAAGAGTTCCATCCTTTACCAGTAAACCATGAAGGGGACTCCTCTCGAAACGTTATCATGTGGCTGGA
CCACCGGGCTGTCAGCCAGGTCCACAGGATTAATGAGACCAAGCACAGAGTCCTTCAGTATGTGGGTGGT
GTGATGTCTGTGGAGATGCAGGCTCCAAAGCTCCTGTGGCTGAAGGAGAACTTGAGAGAGATTTGCTGGG
ATAAGGCGGGACATTTCTTTGATCTCCCAGACTTCTTATCATGGAAGGCAACAGGTGTCACAGCACGGTC
TCTCTGCTCCTTGGTGTGCAAATGGACATACTCAGCAGAGAAAGGTTGGGATGACAGCTTCTGGAAGATG
ATTGGACTGGAAGATCTCATTGATGATAATTACAGCAAAATAGGAAACCTCGTGTTGCTTCCTGGAGCTG
CTCTTGGAATTGGGCTCACACCAGAAGCAGCCAGAGAGCTGGGTCTTCCTTCAGGAATTGCAGTGGCAGC
CTCACTCATTGATGCCCATGCAGGAGGACTAGGAGTGATTGGGGCAGATGTGAGAGGTCACGGGCTTACC
TGTGAGGGACAGCCAGTGACGTCAAGGCTGGCTGTCATCTGTGGAACATCATCTTGTCACATGGGGATCA
GCAAAGATCCAGTGTTTGTACCAGGTGTCTGGGGACCTTATTATTCAGCCATGGTCCCTGGGTTCTGGTT
GAATGAAGGTGGTCAGAGTGTGACTGGAAAATTGATAGACCATATGGTGCAGGGCCATCCTGCCTTTCCT
GAACTACAAGCCAAGGCCACAGCCAGATGCCAGAGTATATATGCATATTTGAATAGTCACCTGGATCTGA
TTAAGAAGGCTCAGCCTGTGGGTTTCCTCACTGTTGATTTACATGTTTGGCCAGATTTCCATGGCAACCG
GTCTCCCTTAGCAGATCTGACTCTGAAGGGCATGGTCACTGGATTGACGCTGTCTCAGGACCTTGATGAT
CTTGCCATCCTCTACCTGGCCACTGTTCAAGCCATTGCTTTTGGGACTCGCTTCATCATTGAAACAATGG
AGGCAGCAGGGCACTCTCTCAGTACCCTCTTCTTATGTGGAGGCCTAAGCAAGAATCCGCTTTTTGTGCA
AATGCATGCTGACATTACTGGCATGCCTGTGGTCCTGTCACAAGAGGTGGAGTCTGTCCTCGTGGGAGCT
GCTATTCTGGGTGCCTGTGCCTCAGGGGACTTCACTTCTGTGCAGGAGGCAATGGCAAGGATGAGCAAAG
TGGGGAAAGTCGTGTTTCCGGAACATGCTGATAAAAAATATTATGACAAGAAATATCAAGTGTTTCTGAG
AATGGTTGAGCACCAGAAGGAGTATTCAGCAATCATGAATGGAAGCTGA

Translation (552 aa):
MMSGRDQEPSRYYVGIDVGTGSVRAALVDQRGLLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCLVTKEV
VQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNHEGDSSRNVIMWLDHRAVSQVHRINETKHRVLQYVGG
VMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKM
IGLEDLIDDNYSKIGNLVLLPGAALGIGLTPEAARELGLPSGIAVAASLIDAHAGGLGVIGADVRGHGLT
CEGQPVTSRLAVICGTSSCHMGISKDPVFVPGVWGPYYSAMVPGFWLNEGGQSVTGKLIDHMVQGHPAFP
ELQAKATARCQSIYAYLNSHLDLIKKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSQDLDD
LAILYLATVQAIAFGTRFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGA
AILGACASGDFTSVQEAMARMSKVGKVVFPEHADKKYYDKKYQVFLRMVEHQKEYSAIMNGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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