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Report for CCDS51129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51129.1 Public Mus musculus 4 Pnisr 23 108 98 CCDS HistoryNCBI Gene:66625Re-query CCDS DB by CCDS ID:51129.1Re-query CCDS DB by GeneID:66625See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029911.11 ENSMUSP00000029911.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029911.11Link to Ensembl Protein Viewer:ENSMUSP00000029911.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029911Re-query CCDS DB by Protein ID:ENSMUSP00000029911
Original member Current member NCBI NM_025669.2 NP_079945.1 Accepted alive Link to Nucleotide Sequence:NM_025669.2Link to Protein Sequence:NP_079945.1Re-query CCDS DB by Nucleotide ID:NM_025669Re-query CCDS DB by Protein ID:NP_079945Link to BLAST:NP_079945.1

Chromosomal Locations for CCDS 51129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 21854358 21854445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21857180 21857368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21859084 21859307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21860820 21860991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21861987 21862177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21865877 21866014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21869516 21869615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21870352 21870405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21871438 21871608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21873586 21874672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 21874913 21874943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGTGGGATCAAGGAGGGCAGCCGTGGCAGCAATGGCCCTTGAACCAGCAACAGTGGATGCAGTCATTTC
AGCACCAGCAAGATCCAAGCCAGATTGACTGGGCTGCTTTGGCCCAGGCTTGGATTGCACAAAGAGAAGC
CTCAGGACAGCAAAGCATCGTAGAACAACCTCCAGGAATGATGCCAAATGGACAGGATATGTCTGCAATG
GAGTCTGGTCCAAATAATCATGGGAATTTTCAAGGGGATTCAAATTTTAACAGAATGTGGCAACCAGAAT
GGGGAATGCATCAGCAGCCCCCACACCCCCCTCCAGAGCAGCCATGGATGCCACCAGCACCAGGCCCAAT
GGACATTGTTCCTCCTTCTGAAGACAGCAACAGTCAGGACAGTGGGGAGTTTGCCCCTGACAACAGGCAT
ATATTTAACCAGAACAATCACAACTTTGGTGGACCACCTGATAACTTTGCAGTGGGGCCGGTGAACCAGT
TTGACTATCAGCATGGGGCTGCTTTTGGTCCACCACAAGGTGGATTTCATCCTCCTTATTGGCAACCAGG
ACCTCCAGGACCTCCAGCACCTACACAGAACCGAAGAGAGCGGCCACCATCATTCAGGGACCGACAGCGT
TCACCTATTGCACTTCCAGTGAAGCAGGAGCCTCCACAAATTGATGCAGTAAAACGCAGGACTCTTCCAG
CCTGGATTCGTGAAGGCCTTGAGAAGATGGAACGTGAAAAGCAGAAGAAGTTAGAGAAAGAGAGAATGGA
ACAGCAGCGTTCACAGTTGTCAAAAAAAGAAAAGAAGGCCACTGAAGATGCGGAAGGAGGGGATGGGCCT
CGCTTACCCCAAAGAAGTAAATTTGATAGTGATGAAGAGGACGAAGATGCTGAAAACCTGGAGGCTGTGA
GCAGTGGCAAAGTCACTAGAAGTCCATCTCCAGCTCCCCAAGAAGAGCACAGTGAACCAGAGATGACGGA
AGAGGAGAAGGAGTACCAAATGATGTTGCTGACAAAGATGCTTCTAACTGAAATTCTCCTGGACGTCACA
GATGAAGAAATTTATTACGTGGCTAAAGATGCGCATCGGAAAGCAACGAAAGCTCCTGCAAAGCAGCTGG
CACAGTCCAGTGCACTGGCCTCCCTCACCGGCCTCGGCGGACTGGGTGGCTATGGATCAGGCGACAGTGA
AGATGAGAGGAGTGACAGAGGTTCTGAGTCATCTGACACTGATGATGAAGAGTTACGGCACCGAATCCGG
CAAAAACAAGAAGCTTTTTGGAGAAAAGAGAAAGAACAGCAGCTGTTACAAGATAAACAGATAGAAGAAG
AAAAGCAGCAAACAGAAAGGGTTACAAAAGAGATGAATGAATTTATTCACAGAGAGCAAAATAGTTTATC
ACTTCTAGAAGCAAGTGAAGCCGACCGTGATGCGGTCAATGACAAGAAAAGAACTCCAAACGAAGCTCCG
TCAGTGTTAGAGCCCAAAAGAGAGCATAAAGGGAAGGAGAAGGAGCGGGGGAGTAGGTCAGGCAGCTCCA
GTAGCGGCAGCTCCAGTAGCGGCAGCAGGACGAGCAGCAGTAGCAGCTCCGTCTCCAGTTCTTCCTACAG
CTCCAGCTCAGGCAGCAGCTGCACGTCCTCTCGCTCCTCATCTCCTAAGCGGAGAAAGAGACCCAGTAGG
AGCAGGTCTCCCCCAGCGAAAGCTAGACGCAGCAGGAGCAGGAGCTACTCGCGCAGAGTGAAAGTAGACA
GCAGCAGGACCAGGGGGAAGCTGAGAGATAGGCGGAGATCTAATAGAAGTAGCATTGAAAGAGAAAGACG
AAGAAACCGGAGCCCTTCCAGAGACAGACGTAGAAGCAGAAGTCGCTCAAGGGATAGACGAACCAATCGT
TCCAGTCGCAGTAGGAGTCGAGATAGGCGTAAAATTGAGGATCCACGTGGAAATCTTAGTGGGAACAGTC
ATAAGCATAAAGGTGAGGCTAAAGAACAAGACAGGAAAAAGGAGAGGAGTCGAAGTGTAGATAAAGACAG
GAGAAAGAAAGACAAGGAAAGGGACCGTGAACTGGATAAAAGAAAAGAAAAACAGAAAAGGGAAGAAAAA
GATTTTAAATTCAGTAGTCAGGATGATCGGTTAAAAAGGAAGCGAGAAAGTGAGAGAACTTTCTGTAGGA
GTGGTTCTATATCTGTTAAAGTCATAAGACATGACTCTAGACAGGATAGTAAGAAAAATGCTACCAAAGA
TAGTAAAAGGCATTCAGGTTCTGATTCTAGTGGAAGGAGCAGTTCCGAATCCCCCGGAAGTAGCAAAGAA
AAGAAGGCTAAGAAGCCTAAACATAGTCGATCGCGCTCCCTGGAGAAATCTCAAAGGTCTGGTAAGAAGG
CAAGCCGCAAACACAAGTCTAAGTCCCGATCAAGATCAACAACCCCTCCCCGTCGTAAGCGCTGA

Translation (814 aa):
MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQREASGQQSIVEQPPGMMPNGQDMSAM
ESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPHPPPEQPWMPPAPGPMDIVPPSEDSNSQDSGEFAPDNRH
IFNQNNHNFGGPPDNFAVGPVNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPTQNRRERPPSFRDRQR
SPIALPVKQEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSKKEKKATEDAEGGDGP
RLPQRSKFDSDEEDEDAENLEAVSSGKVTRSPSPAPQEEHSEPEMTEEEKEYQMMLLTKMLLTEILLDVT
DEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYGSGDSEDERSDRGSESSDTDDEELRHRIR
QKQEAFWRKEKEQQLLQDKQIEEEKQQTERVTKEMNEFIHREQNSLSLLEASEADRDAVNDKKRTPNEAP
SVLEPKREHKGKEKERGSRSGSSSSGSSSSGSRTSSSSSSVSSSSYSSSSGSSCTSSRSSSPKRRKRPSR
SRSPPAKARRSRSRSYSRRVKVDSSRTRGKLRDRRRSNRSSIERERRRNRSPSRDRRRSRSRSRDRRTNR
SSRSRSRDRRKIEDPRGNLSGNSHKHKGEAKEQDRKKERSRSVDKDRRKKDKERDRELDKRKEKQKREEK
DFKFSSQDDRLKRKRESERTFCRSGSISVKVIRHDSRQDSKKNATKDSKRHSGSDSSGRSSSESPGSSKE
KKAKKPKHSRSRSLEKSQRSGKKASRKHKSKSRSRSTTPPRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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