NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51041.1 Public Mus musculus 3 Cym 23 108 98 CCDS HistoryNCBI Gene:229697Re-query CCDS DB by CCDS ID:51041.1Re-query CCDS DB by GeneID:229697See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029504.8 ENSMUSP00000029504.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029504.8Link to Ensembl Protein Viewer:ENSMUSP00000029504.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029504Re-query CCDS DB by Protein ID:ENSMUSP00000029504
Original member Current member NCBI NM_001111143.1 NP_001104613.1 Accepted alive Link to Nucleotide Sequence:NM_001111143.1Link to Protein Sequence:NP_001104613.1Re-query CCDS DB by Nucleotide ID:NM_001111143Re-query CCDS DB by Protein ID:NP_001104613Link to BLAST:NP_001104613.1

Chromosomal Locations for CCDS 51041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107211363 107211494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107212774 107212872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107213379 107213523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107214211 107214324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107215926 107216125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107218118 107218236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107218615 107218732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107219625 107219775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107221645 107221706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGAGGCGCTTTGTGCTGCTCCTCGCTGCTCTCGCCATCTCCCAGAGCCATGTGGTCACCAGGATCCCCC
TGCACAAAGGGAAGTCTCTGAGGAACACCCTGAAGGAGCAAGGACTGCTGGAGGACTTTCTGAGCAGACA
GCAGTACGAGTTCAGTGAGAAGAACTCCCGCATCGGGGTGGTGGCCAGTGAGCCTCTGATCAACTATCTA
GATAGTGAGTACTTTGGAACGATCTACATTGGGACACCACCGCAGGAGTTCACCGTGGTGTTTGACACAG
GCTCCTCAGAACTCTGGGTACCCTCTGTCTACTGCAACAGCAAAGTGTGCCGAAACCACCACCGTTTTGA
CCCATCCAAGTCCATCACCTTCCAGAACCTGAGCAAGCCCCTGTTTGTCCAGTATGGTACTGGTAGAATG
GAGGGCTTCCTGGCCTACGACACTGTCACAGTCTCTGATATTGTAGTGTCCCATCAGACTGTGGGCCTGA
GTACCCAGGAACCGGGCGACATCTTCACCTACTCTCCATTTGATGGCATCCTGGGCCTGGCCTATCCTAC
TTTTGCCTCCAAATACTCAGTACCCATATTTGACAACATGATGAACAGGCACCTGGTGGCCCAAGACCTG
TTCTCCGTTTACATGAGCAGGAATGAGCAGGGGAGCATGCTCACACTGGGGGCCATCGATCAGTCCTACT
TCATAGGCTCACTGCACTGGGTGCCTGTGACAGTACAGGGATATTGGCAGTTCACAGTGGACAGGATCAC
AATCAATGGTGAAGTGGTGGCTTGTCAAGGTGGCTGCCCTGCCGTTCTGGACACAGGCACTGCCCTGTTG
ACGGGGCCTGGTAGAGACATCCTCAATATTCAGCAAGTCATTGGAGCTGTGCAAGGCCATAATGACCAGT
TTGACATCGACTGCTGGAGGCTGGACATCATGCCCACCGTTGTCTTTGAGATCCATGGTAGGGAGTTCCC
ACTGCCACCCTACGCTTATACCAACCAGGTCCAGGGCTTCTGCTCCAGTGGCTTCAAGCAGGGCTCCCAC
ATGTGGATCCTTGGGGATGTTTTCATTCGGGAGTTCTACAGTGTGTTTGACAGAGCCAACAATCGTGTTG
GGCTGGCCAAGGCTATCTGA

Translation (379 aa):
MRRFVLLLAALAISQSHVVTRIPLHKGKSLRNTLKEQGLLEDFLSRQQYEFSEKNSRIGVVASEPLINYL
DSEYFGTIYIGTPPQEFTVVFDTGSSELWVPSVYCNSKVCRNHHRFDPSKSITFQNLSKPLFVQYGTGRM
EGFLAYDTVTVSDIVVSHQTVGLSTQEPGDIFTYSPFDGILGLAYPTFASKYSVPIFDNMMNRHLVAQDL
FSVYMSRNEQGSMLTLGAIDQSYFIGSLHWVPVTVQGYWQFTVDRITINGEVVACQGGCPAVLDTGTALL
TGPGRDILNIQQVIGAVQGHNDQFDIDCWRLDIMPTVVFEIHGREFPLPPYAYTNQVQGFCSSGFKQGSH
MWILGDVFIREFYSVFDRANNRVGLAKAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH