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Report for CCDS5098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5098.1 Public Homo sapiens 6 CCN6 24 110 108 CCDS HistoryNCBI Gene:8838Re-query CCDS DB by CCDS ID:5098.1Re-query CCDS DB by GeneID:8838See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230529.9 ENSP00000230529.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000230529.9Link to Ensembl Protein Viewer:ENSP00000230529.5Re-query CCDS DB by Nucleotide ID:ENST00000230529Re-query CCDS DB by Protein ID:ENSP00000230529
Original member Current member EBI ENST00000368666.7 ENSP00000357655.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368666.7Link to Ensembl Protein Viewer:ENSP00000357655.4Re-query CCDS DB by Nucleotide ID:ENST00000368666Re-query CCDS DB by Protein ID:ENSP00000357655
Original member Current member EBI ENST00000604763.5 ENSP00000473777.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000604763.5Link to Ensembl Protein Viewer:ENSP00000473777.1Re-query CCDS DB by Nucleotide ID:ENST00000604763Re-query CCDS DB by Protein ID:ENSP00000473777
Original member Current member NCBI NM_003880.4 NP_003871.1 Accepted alive Link to Nucleotide Sequence:NM_003880.4Link to Protein Sequence:NP_003871.1Re-query CCDS DB by Nucleotide ID:NM_003880Re-query CCDS DB by Protein ID:NP_003871Link to BLAST:NP_003871.1
Original member Current member NCBI NM_198239.2 NP_937882.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198239.2Link to Protein Sequence:NP_937882.2Re-query CCDS DB by Nucleotide ID:NM_198239Re-query CCDS DB by Protein ID:NP_937882Link to BLAST:NP_937882.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003871.1 354 O95389-1 354 100% 0 0
NP_937882.2 354 O95389-1 354 100% 0 0

Chromosomal Locations for CCDS 5098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112054358 112054405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112060991 112061288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112064755 112064997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112068205 112068398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112069339 112069620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCAGGGGCTCCTCTTCTCCACTCTTCTGCTTGCTGGCCTGGCACAGTTCTGCTGCAGGGTACAGGGCA
CTGGACCATTAGATACAACACCTGAAGGAAGGCCTGGAGAAGTGTCAGATGCACCTCAGCGTAAACAGTT
TTGTCACTGGCCCTGCAAATGCCCTCAGCAGAAGCCCCGTTGCCCTCCTGGAGTGAGCCTGGTGAGAGAT
GGCTGTGGATGCTGTAAAATCTGTGCCAAGCAACCAGGGGAAATCTGCAATGAAGCTGACCTCTGTGACC
CACACAAAGGGCTGTATTGTGACTACTCAGTAGACAGGCCTAGGTACGAGACTGGAGTGTGTGCATACCT
TGTAGCTGTTGGGTGCGAGTTCAACCAGGTACATTATCATAATGGCCAAGTGTTTCAGCCCAACCCCTTG
TTCAGCTGCCTCTGTGTGAGTGGGGCCATTGGATGCACACCTCTGTTCATACCAAAGCTGGCTGGCAGTC
ACTGCTCTGGAGCTAAAGGTGGAAAGAAGTCTGATCAGTCAAACTGTAGCCTGGAACCATTACTACAGCA
GCTTTCAACAAGCTACAAAACAATGCCAGCTTATAGAAATCTCCCACTTATTTGGAAAAAAAAATGTCTT
GTGCAAGCAACAAAATGGACTCCCTGCTCCAGAACATGTGGGATGGGAATATCTAACAGGGTGACCAATG
AAAACAGCAACTGTGAAATGAGAAAAGAGAAAAGACTGTGTTACATTCAGCCTTGCGACAGCAATATATT
AAAGACAATAAAGATTCCCAAAGGAAAAACATGCCAACCTACTTTCCAACTCTCCAAAGCTGAAAAATTT
GTCTTTTCTGGATGCTCAAGTACTCAGAGTTACAAACCCACTTTTTGTGGAATATGCTTGGATAAGAGAT
GCTGTATCCCTAATAAGTCTAAAATGATTACTATTCAATTTGATTGCCCAAATGAGGGGTCATTTAAATG
GAAGATGCTGTGGATTACATCTTGTGTGTGTCAGAGAAACTGCAGAGAACCTGGAGATATATTTTCTGAG
CTCAAGATTCTGTAA

Translation (354 aa):
MQGLLFSTLLLAGLAQFCCRVQGTGPLDTTPEGRPGEVSDAPQRKQFCHWPCKCPQQKPRCPPGVSLVRD
GCGCCKICAKQPGEICNEADLCDPHKGLYCDYSVDRPRYETGVCAYLVAVGCEFNQVHYHNGQVFQPNPL
FSCLCVSGAIGCTPLFIPKLAGSHCSGAKGGKKSDQSNCSLEPLLQQLSTSYKTMPAYRNLPLIWKKKCL
VQATKWTPCSRTCGMGISNRVTNENSNCEMRKEKRLCYIQPCDSNILKTIKIPKGKTCQPTFQLSKAEKF
VFSGCSSTQSYKPTFCGICLDKRCCIPNKSKMITIQFDCPNEGSFKWKMLWITSCVCQRNCREPGDIFSE
LKIL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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