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Report for CCDS5092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5092.1 Public Homo sapiens 6 TRAF3IP2 24 110 108 CCDS HistoryNCBI Gene:10758Re-query CCDS DB by CCDS ID:5092.1Re-query CCDS DB by GeneID:10758See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5092.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340026.10 ENSP00000345984.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340026.10Link to Ensembl Protein Viewer:ENSP00000345984.6Re-query CCDS DB by Nucleotide ID:ENST00000340026Re-query CCDS DB by Protein ID:ENSP00000345984
Original member Current member NCBI NM_147200.3 NP_671733.2 Accepted alive Link to Nucleotide Sequence:NM_147200.3Link to Protein Sequence:NP_671733.2Re-query CCDS DB by Nucleotide ID:NM_147200Re-query CCDS DB by Protein ID:NP_671733Link to BLAST:NP_671733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671733.2 574 O43734-1 574 100% 0 0

Chromosomal Locations for CCDS 5092.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 111559405 111559551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111562965 111563039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111566444 111566560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111567624 111567692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111572895 111572983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111575643 111575821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111580197 111580389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111591258 111592094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 111601196 111601214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGCCTCCTCAGCTTCAAGAAACTAGAATGAACCGAAGCATTCCTGTGGAGGTTGATGAATCAGAACCAT
ACCCAAGTCAGTTGCTGAAACCAATCCCAGAATATTCCCCGGAAGAGGAATCAGAACCACCTGCTCCAAA
TATAAGGAACATGGCACCCAACAGCTTGTCTGCACCCACAATGCTTCACAATTCCTCCGGAGACTTTTCT
CAAGCTCACTCAACCCTGAAACTTGCAAATCACCAGCGGCCTGTATCCCGGCAGGTCACCTGCCTGCGCA
CTCAAGTTCTGGAGGACAGTGAAGACAGTTTCTGCAGGAGACACCCAGGCCTGGGCAAAGCTTTCCCTTC
TGGGTGCTCTGCAGTCAGCGAGCCTGCGTCTGAGTCTGTGGTTGGAGCCCTCCCTGCAGAGCATCAGTTT
TCATTTATGGAAAAACGTAATCAATGGCTGGTATCTCAGCTTTCAGCGGCTTCTCCTGACACTGGCCATG
ACTCAGACAAATCAGACCAAAGTTTACCTAATGCCTCAGCAGACTCCTTGGGCGGTAGCCAGGAGATGGT
GCAACGGCCCCAGCCTCACAGGAACCGAGCAGGCCTGGATCTGCCAACCATAGACACGGGATATGATTCC
CAGCCCCAGGATGTCCTGGGCATCAGGCAGCTGGAAAGGCCCCTGCCCCTCACCTCCGTGTGTTACCCCC
AGGACCTCCCCAGACCTCTCAGGTCCAGGGAGTTCCCTCAGTTTGAACCTCAGAGGTATCCAGCATGTGC
ACAGATGCTGCCTCCCAATCTTTCCCCACATGCTCCATGGAACTATCATTACCATTGTCCTGGAAGTCCC
GATCACCAGGTGCCATATGGCCATGACTACCCTCGAGCAGCCTACCAGCAAGTGATCCAGCCGGCTCTGC
CTGGGCAGCCCCTGCCTGGAGCCAGTGTGAGAGGCCTGCACCCTGTGCAGAAGGTTATCCTGAATTATCC
CAGCCCCTGGGACCACGAAGAGAGGCCCGCACAGAGAGACTGCTCCTTTCCGGGGCTTCCAAGGCACCAG
GACCAGCCACATCACCAGCCACCTAATAGAGCTGGTGCTCCTGGGGAGTCCTTGGAGTGCCCTGCAGAGC
TGAGACCACAGGTTCCCCAGCCTCCGTCCCCAGCTGCTGTGCCTAGACCCCCTAGCAACCCTCCAGCCAG
AGGAACTCTAAAAACAAGCAATTTGCCAGAAGAATTGCGGAAAGTCTTTATCACTTATTCGATGGACACA
GCTATGGAGGTGGTGAAATTCGTGAACTTTTTGTTGGTAAATGGCTTCCAAACTGCAATTGACATATTTG
AGGATAGAATCCGAGGCATTGATATCATTAAATGGATGGAGCGCTACCTTAGGGATAAGACCGTGATGAT
AATCGTAGCAATCAGCCCCAAATACAAACAGGACGTGGAAGGCGCTGAGTCGCAGCTGGACGAGGATGAG
CATGGCTTACATACTAAGTACATTCATCGAATGATGCAGATTGAGTTCATAAAACAAGGAAGCATGAATT
TCAGATTCATCCCTGTGCTCTTCCCAAATGCTAAGAAGGAGCATGTGCCCACCTGGCTTCAGAACACTCA
TGTCTACAGCTGGCCCAAGAATAAAAAAAACATCCTGCTGCGGCTGCTGAGAGAGGAAGAGTATGTGGCT
CCTCCACGGGGGCCTCTGCCCACCCTTCAGGTGGTTCCCTTGTGA

Translation (574 aa):
MPPQLQETRMNRSIPVEVDESEPYPSQLLKPIPEYSPEEESEPPAPNIRNMAPNSLSAPTMLHNSSGDFS
QAHSTLKLANHQRPVSRQVTCLRTQVLEDSEDSFCRRHPGLGKAFPSGCSAVSEPASESVVGALPAEHQF
SFMEKRNQWLVSQLSAASPDTGHDSDKSDQSLPNASADSLGGSQEMVQRPQPHRNRAGLDLPTIDTGYDS
QPQDVLGIRQLERPLPLTSVCYPQDLPRPLRSREFPQFEPQRYPACAQMLPPNLSPHAPWNYHYHCPGSP
DHQVPYGHDYPRAAYQQVIQPALPGQPLPGASVRGLHPVQKVILNYPSPWDHEERPAQRDCSFPGLPRHQ
DQPHHQPPNRAGAPGESLECPAELRPQVPQPPSPAAVPRPPSNPPARGTLKTSNLPEELRKVFITYSMDT
AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAESQLDEDE
HGLHTKYIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
PPRGPLPTLQVVPL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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