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Report for CCDS50899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50899.1 Public Mus musculus 3 Pgrmc2 23 108 98 CCDS HistoryNCBI Gene:70804Re-query CCDS DB by CCDS ID:50899.1Re-query CCDS DB by GeneID:70804See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058578.7 ENSMUSP00000056643.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058578.7Link to Ensembl Protein Viewer:ENSMUSP00000056643.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058578Re-query CCDS DB by Protein ID:ENSMUSP00000056643
Original member NCBI NM_027558.1 NP_081834.1 Updated not alive Link to Nucleotide Sequence:NM_027558.1Link to Protein Sequence:NP_081834.1Re-query CCDS DB by Nucleotide ID:NM_027558Re-query CCDS DB by Protein ID:NP_081834
Current member NCBI NM_027558.2 NP_081834.1 Accepted alive Link to Nucleotide Sequence:NM_027558.2Link to Protein Sequence:NP_081834.1Re-query CCDS DB by Nucleotide ID:NM_027558Re-query CCDS DB by Protein ID:NP_081834Link to BLAST:NP_081834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081834.1 217 Q80UU9 217 100% 0 0

Chromosomal Locations for CCDS 50899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 41068627 41068724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41070280 41070435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 41082595 41082994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCGGCGGGTGATGGGGACGTAAAGCTAAGCACCCTGGGGAGCGGCGGGGAGAGTGGCGGCGACGGGA
GCCCGGGTGGCGCCGGAGCGACGGCGGCGAGGAGCAGTTGGGTGGCGGCGCTGCTGGCGACGGGCGGGGA
GATGCTGCTGAACGTGGCGCTGGTGGCGCTGGTGCTGCTGGGGGCCTACCGGCTGTGGGTGCGCTGGGGG
CGGCGTGGTCTGTGCTCGGGACCCGGGGCGGGCGAGGAGAGCCCGGCCGCCACGCTGCCGCGCATGAAGA
AGCGGGACTTCAGCCTGGAGCAGCTGCGCCAGTACGACGGGGCGCGCACGCCGCGCATCCTGCTCGCGGT
CAATGGGAAAGTCTTCGACGTGACCAAAGGCAGCAAGTTCTACGGCCCCGCGGGTCCATATGGCATCTTT
GCTGGCAGGGACGCCTCCAGGGGGCTGGCGACATTCTGCCTGGATAAGGATGCACTTAGAGATGAATATG
ACGACCTCTCAGATTTGAACGCAGTGCAAATGGAGAGTGTTCGAGAATGGGAAATGCAGTTTAAAGAAAA
ATATGATTATGTAGGCAGACTCCTAAAGCCAGGGGAGGAGCCATCAGAGTACACAGATGAGGAGGACACC
AAGGATCACAGTAAACAGGACTGA

Translation (217 aa):
MAAGDGDVKLSTLGSGGESGGDGSPGGAGATAARSSWVAALLATGGEMLLNVALVALVLLGAYRLWVRWG
RRGLCSGPGAGEESPAATLPRMKKRDFSLEQLRQYDGARTPRILLAVNGKVFDVTKGSKFYGPAGPYGIF
AGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGEEPSEYTDEEDT
KDHSKQD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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