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Report for CCDS50805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50805.1 Public Mus musculus 2 Tshz2 23 108 98 CCDS HistoryNCBI Gene:228911Re-query CCDS DB by CCDS ID:50805.1Re-query CCDS DB by GeneID:228911See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109157.1 ENSMUSP00000104785.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109157.1Link to Ensembl Protein Viewer:ENSMUSP00000104785.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109157Re-query CCDS DB by Protein ID:ENSMUSP00000104785
Original member Current member EBI ENSMUST00000109159.2 ENSMUSP00000104787.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109159.2Link to Ensembl Protein Viewer:ENSMUSP00000104787.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109159Re-query CCDS DB by Protein ID:ENSMUSP00000104787
Original member NCBI NM_001363022.1 NP_001349951.1 Updated not alive Link to Nucleotide Sequence:NM_001363022.1Link to Protein Sequence:NP_001349951.1Re-query CCDS DB by Nucleotide ID:NM_001363022Re-query CCDS DB by Protein ID:NP_001349951
Current member NCBI NM_001363022.2 NP_001349951.1 Accepted alive Link to Nucleotide Sequence:NM_001363022.2Link to Protein Sequence:NP_001349951.1Re-query CCDS DB by Nucleotide ID:NM_001363022Re-query CCDS DB by Protein ID:NP_001349951Link to BLAST:NP_001349951.1
Original member NCBI NM_001363023.1 NP_001349952.1 Updated not alive Link to Nucleotide Sequence:NM_001363023.1Link to Protein Sequence:NP_001349952.1Re-query CCDS DB by Nucleotide ID:NM_001363023Re-query CCDS DB by Protein ID:NP_001349952
Current member NCBI NM_001363023.2 NP_001349952.1 Accepted alive Link to Nucleotide Sequence:NM_001363023.2Link to Protein Sequence:NP_001349952.1Re-query CCDS DB by Nucleotide ID:NM_001363023Re-query CCDS DB by Protein ID:NP_001349952Link to BLAST:NP_001349952.1
Original member NCBI NM_080455.3 NP_536703.2 Updated not alive Link to Nucleotide Sequence:NM_080455.3Link to Protein Sequence:NP_536703.2Re-query CCDS DB by Nucleotide ID:NM_080455Re-query CCDS DB by Protein ID:NP_536703
Current member NCBI NM_080455.4 NP_536703.2 Accepted alive Link to Nucleotide Sequence:NM_080455.4Link to Protein Sequence:NP_536703.2Re-query CCDS DB by Nucleotide ID:NM_080455Re-query CCDS DB by Protein ID:NP_536703Link to BLAST:NP_536703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349951.1 1030 Q68FE9 1030 100% 0 0
NP_001349952.1 1030 Q68FE9 1030 100% 0 0
NP_536703.2 1030 Q68FE9 1030 100% 0 0

Chromosomal Locations for CCDS 50805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 169633740 169633779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 169883526 169886578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3093 nt):
ATGCCAAGGAGGAAACAGCAGGCACCCAAGCGGGCGGCAGGGTATGCCCAGGAGGAAGTCCTGAAGGAAG
AGGAGGAAATAAAGGAAGAGGAGGAGGAAGAAGAAGACAGTGGCTCCGTTGCTCAACACCAGAGCAGCAA
TGACACTGGGACAGACGAGGAACTAGAAACGGGCCCAGAGCAGAAAGGCTACTTCAGCTGCCAGAACTCA
CCGGGGAGCCACCTGTCCAATCAGGATGCAGAAAACGAGTCTCTCCTGAGCGATGCCAGCGACCAGGTGT
CAGACGTCAAAAGTGTCTGTGGCCGAGATGTTTCAGACAAGAAAGCAAACACTCACCCCAAACTTCCAAG
CGAACCCCATAACTGCATGGATAAAATGACAGCTGTCTATGCCAATATCCTGTCAGATTCCTACTGGTCG
GGCCTGGGCCTCGGCTTCAAGTTATCCAACAGTGAGAGACGGAATTGCGACACCCGCAACAGCAGCGGCA
AGAATGATTTTGATTGGCACCAAGATGCCCTGTCCAAAAGCCTGCAGCAGAACTTGCCTTCCCGGTCTGT
CTCTAAGCCCAGCCTATTCAGCTCCGTGCAGCTATACCGGCAGAGCAGTAAGTTGTGTGGCTCGGTGTTC
ACCGGCGCCAGCAGGTTCCGCTGCAGGCAGTGCAGTGCGGCCTACGACACTCTCGTGGAGCTGACCGTGC
ACATGAACGAGACAGGCCACTATCAAGATGACAACCGCAAAAAAGATAAGCTCAGACCCACGAGCTACTC
CAAGCCCCGAAAAAGGGCCTTCCAAGACATGGACAAAGAGGATGCCCAAAAGGTCCTGAAATGTATGTTT
TGTGGTGACTCCTTCGATTCCCTGCAAGATTTGAGTGTCCACATGATAAAGACAAAACATTACCAAAAAG
TGCCTTTGAAGGAGCCGGTACCAACCATTTCCTCCAAGATGGTCACACCAGCCAAGAAGCGTGTTTTCGA
TGTCAACAGGCCTTGCTCCCCTGACTCCACCACAGGGTCCCTTGCAGATTCCTTTTCTTCCCAGAAGAGT
GCTAACCTGCAGCTGCCCTCCAACAGCCGCTACGGCTACCAAAACGGCGCCAGCTACACCTGGCAGTTCG
AGGCCTGCAAGTCCCAGATCTTAAAGTGTATGGAGTGTGGCAGTTCCCATGATACTTTGCAACAACTCAC
CACCCACATGATGGTCACAGGCCACTTTCTCAAAGTCACTAGCTCTGCCTCCAAGAAAGGAAAGCAACTT
GTGTTGGACCCCCTAGCTGTGGAGAAAATGCAGTCACTGTCTGAGACCCCAAACAGTGAGTCTCTGGCCC
CTAAGCCATCAAGTAACTCCCCCTCGGAGTGCACAGCCTCTACCACCGAGTTAAAGAAAGAAAGCAAGAA
GGAGAAGGGAGAGGGCATTGAAGACGAACAAGGTGTGAAAAGCGAGGACTACGAAGACTCTCTACAGAAA
CCTCTCGACCCCACCATAAAATACCAGTACCTAAGAGAGGAGGACTTGGAAGACGGCTCGAAGGGTGGTG
GGGACATTTTAAAGTCACTGGAAAATACCGTAACCACAGCCATCAACAAGGCCCAGAATGGTGCTCCCAG
CTGGAGCGCATACCCAAGTATCCACGCAGCCTACCAGCTCTCAGAGGGCACCAAGCCACCTATGGCAATG
GGCTCTCAGATACTGCAAATCCGACCCAACCTCGCCAACAAGCTGAGGCCCATTGCACCCAAATGGAAAG
GTATGCCACTCGGCCCTGTCCCCACAAGCCTGGCTCTGTACACTCAAGTCAAGAAGGAGACAGAAGACAA
AGATGAAGTCGTGAAGCAGTGTGGGAAGGAAAGTCCCCACGAAGAGGCAACATCTTTCAGTCAGCCTGAG
GGCGAGTCTTTCTCCAAAATTGAACCACCTTCAGAATCCAGAAAGGCTGAGCCCTGTCCCCTGAAAGAGG
AGGAGAAGCCGCAGAAAGAGAAACCGGAGCCCTTAGAACCAGTATCTTCTCTGACCAATGGCTGTGCGCC
GGCTAACCACACCCCGGCTCTGCCTTCCATCAACCCGCTCAGTGCCCTGCAGTCCGTCCTGAACAACCAC
CTGGGCAAAGCCACGGAGCCCTTGCGCTCCCCTTCCTGCTCCAGTCCCAACTCAAGCACAAGCCCCGTGT
TCCATAAATCCAGCCTCCACGTGGTGGACAAGCCGGTCATAAGTCCCACCTCCACCAGGCCGGCGGCCAG
CGTGGCCAGACACTACCTGTTTGAGAACACCGACCAGCCCATTGACCTGACCAAGTCCAAAAGCAAGAGA
GCCGAGTCCTCGCAAGCACAATCCTGCACGTCCCCACCTCAGAAGCATGCTCTGTGTGACATTGCTGATA
TGGTCAAGGTCCTCCCCAAAGCCACCACCCCAAAGCCAGCCGCCTCCTCGAGGGTCCCTCCTATGAAGCT
GGAAATCGACGTCAGACGCTTCGAGGATGTTTCGAGCGAAGTCTCCACTTTGCACAAAAGGAAAGGCCGG
CAGTCCAACTGGAACCCCCAGCATCTTCTCATCCTGCAAGCTCAGTTTGCCTCGAGCCTCTTCCAGACCT
CAGAGGGCAAATACCTGCTTTCTGACCTGGGCCCCCAAGAGCGGATGCAAATCTCCAAGTTCACCGGACT
CTCCATGACCACAATCAGCCACTGGCTGGCTAACGTCAAATACCAGCTTAGGAAAACAGGTGGGACAAAG
TTCCTGAAAAACATGGACAAAGGGCACCCCATCTTTTACTGCAGTGACTGTGCGTCCCAGTTCAGAACCC
CCTCTACCTACATCAGCCACCTAGAGTCTCACCTGGGCTTCCAAATGAAGGACATGACCCGGATGGCGGC
TGACCAGCAAAGCAAGGTGGAGCAGGAGATCTCCCGAGTGTCGTCGGCTCAGAGGTCTCCAGAAACAATA
GCTGGCGAAGAGGACACAGACTCTAAATTCAAGTGTAAGTTATGCCGTCGGACATTTGTGAGCAAACACG
CAGTAAAACTCCACCTAAGCAAAACGCACAGCAAGTCACCCGAACACCACTCTCAGTTTGTAGCAGACGT
GGATGAAGAATAG

Translation (1030 aa):
MPRRKQQAPKRAAGYAQEEVLKEEEEIKEEEEEEEDSGSVAQHQSSNDTGTDEELETGPEQKGYFSCQNS
PGSHLSNQDAENESLLSDASDQVSDVKSVCGRDVSDKKANTHPKLPSEPHNCMDKMTAVYANILSDSYWS
GLGLGFKLSNSERRNCDTRNSSGKNDFDWHQDALSKSLQQNLPSRSVSKPSLFSSVQLYRQSSKLCGSVF
TGASRFRCRQCSAAYDTLVELTVHMNETGHYQDDNRKKDKLRPTSYSKPRKRAFQDMDKEDAQKVLKCMF
CGDSFDSLQDLSVHMIKTKHYQKVPLKEPVPTISSKMVTPAKKRVFDVNRPCSPDSTTGSLADSFSSQKS
ANLQLPSNSRYGYQNGASYTWQFEACKSQILKCMECGSSHDTLQQLTTHMMVTGHFLKVTSSASKKGKQL
VLDPLAVEKMQSLSETPNSESLAPKPSSNSPSECTASTTELKKESKKEKGEGIEDEQGVKSEDYEDSLQK
PLDPTIKYQYLREEDLEDGSKGGGDILKSLENTVTTAINKAQNGAPSWSAYPSIHAAYQLSEGTKPPMAM
GSQILQIRPNLANKLRPIAPKWKGMPLGPVPTSLALYTQVKKETEDKDEVVKQCGKESPHEEATSFSQPE
GESFSKIEPPSESRKAEPCPLKEEEKPQKEKPEPLEPVSSLTNGCAPANHTPALPSINPLSALQSVLNNH
LGKATEPLRSPSCSSPNSSTSPVFHKSSLHVVDKPVISPTSTRPAASVARHYLFENTDQPIDLTKSKSKR
AESSQAQSCTSPPQKHALCDIADMVKVLPKATTPKPAASSRVPPMKLEIDVRRFEDVSSEVSTLHKRKGR
QSNWNPQHLLILQAQFASSLFQTSEGKYLLSDLGPQERMQISKFTGLSMTTISHWLANVKYQLRKTGGTK
FLKNMDKGHPIFYCSDCASQFRTPSTYISHLESHLGFQMKDMTRMAADQQSKVEQEISRVSSAQRSPETI
AGEEDTDSKFKCKLCRRTFVSKHAVKLHLSKTHSKSPEHHSQFVADVDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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