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Report for CCDS50790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50790.1 Public Mus musculus 2 Tox2 23 108 98 CCDS HistoryNCBI Gene:269389Re-query CCDS DB by CCDS ID:50790.1Re-query CCDS DB by GeneID:269389See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165937.7 ENSMUSP00000126243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165937.7Link to Ensembl Protein Viewer:ENSMUSP00000126243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165937Re-query CCDS DB by Protein ID:ENSMUSP00000126243
Original member NCBI NM_001098799.2 NP_001092269.1 Updated not alive Link to Nucleotide Sequence:NM_001098799.2Link to Protein Sequence:NP_001092269.1Re-query CCDS DB by Nucleotide ID:NM_001098799Re-query CCDS DB by Protein ID:NP_001092269
Current member NCBI NM_001098799.3 NP_001092269.1 Accepted alive Link to Nucleotide Sequence:NM_001098799.3Link to Protein Sequence:NP_001092269.1Re-query CCDS DB by Nucleotide ID:NM_001098799Re-query CCDS DB by Protein ID:NP_001092269Link to BLAST:NP_001092269.1

Chromosomal Locations for CCDS 50790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163225468 163225587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163247767 163247832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163275969 163276214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163314322 163314561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163315795 163316022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163319562 163319642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163320298 163320690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163321421 163321548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163322944 163323010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGCAGCAGCATCTCACAGAGGCTGTCGCAGGCGCGTTCTCTCGCTGCCTGGGCTTCCGTGGAATGAGGC
TCAGGCTCCTCACGAGACACTGGTGCATTGCAGGTGCGTCTCTGCAGAAGTTTGATGGTGACAGTGCCTA
CGTGGGGATGAGTGACGGAAATCCAGAGCTCCTGTCAACCAGCCAGACCTATAACAGCCAGGGCGAGAGT
AACGAAGACTATGAGATTCCTCCTATAACGCCTCCCAATCTCCCTGAGCCATCCCTCCTGCACCTGGGGG
ATCACGAAGCCGGCTACCACTCGCTGTGTCACGGCCTTGCGCCCAACGGTCTGCTCCCTGCCTACTCGTA
CCAAGCAATGGATCTCCCTGCCATCATGGTGTCCAACATGCTGGCCCAGGACGGCCATCTGCTGTCAGGC
CAGCTGCCCACGATCCAGGAAATGGTCCACTCGGAGGTGGCGGCATATGACTCAGGCCGGCCAGGGCCCC
TGCTGGGCCGCCCGGCGATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCTCAGCTCATCTCCCAGAT
GGGTATCCGGAGTGGCATTGCTCACGGCTCCCCATCACCTCCAGGGAGCAAGTCAGCGACCCCCTCTCCA
TCCAGTTCCACACAGGAGGAGGAATCAGATGCCCATTTCAAGATCTCGGGAGAGAAGAGACCCTCAGTGG
ACCCAGGCAAAAAGGCCAAGAATCCAAAGAAGAAGAAGAAGAAGGACCCCAATGAGCCACAGAAGCCAGT
GTCGGCCTACGCTCTCTTCTTCAGAGACACTCAGGCTGCCATCAAGGGGCAGAATCCCAGTGCCACCTTT
GGAGATGTGTCCAAAATAGTGGCGTCCATGTGGGACAGCCTGGGAGAAGAGCAGAAACAGGCGTATAAGA
GGAAGACTGAAGCTGCCAAGAAGGAGTACCTGAAAGCCTTGGCGGCCTACAGAGCTAGCCTCGTGTCCAA
GAGCCCCCCGGACCAAGGTGAGGCCAAGAACACTCAGGCAAACCCACCAGCCAAAATGCTTCCACCCAAG
CAGCCCATGTACGCCATGCCCGGCCTGGCTTCCTTCCTGACGCCCTCCGACCTGCAGGCCTTCCGCAGTG
GAGCCTCTCCCGCCAGCCTTGCCAGGACGCTGGGCTCCAAGGCCCTGCTGCCGGGCCTCAGCACATCGCC
GCCACCACCCTCCTTCCCTCTCAGCCCCTCACTGCACCAGCAGCTGCCACTGCCCCCCCACGCGCAGGGC
ACTCTCCTCAGCCCGCCTCTCAGCATGTCCCCAGCCCCGCAGCCTCCTGTCCTGCCTGCCTCCATGGCAC
TCCAGGTGCAGCTGGCGATGAGCCCCTCACCTCCAGGGCCACAGGACTTCCCACACATCTCTGATTTCTC
CAGTGGCTCTGGCTCCCGCTCACCTGGCCCATCCAACCCTTCCAGCAGCGGAGACTGGGATGGGAGTTAC
CCCAGTGGGGAGCGTGGCCTCGGCACCTGCAGACTCTGCAGAGGCAGCCCACCGCCCACCACCAGCCCAA
AGAACCTGCAGGAACCTTCTGCCCGCTGA

Translation (522 aa):
MQQHLTEAVAGAFSRCLGFRGMRLRLLTRHWCIAGASLQKFDGDSAYVGMSDGNPELLSTSQTYNSQGES
NEDYEIPPITPPNLPEPSLLHLGDHEAGYHSLCHGLAPNGLLPAYSYQAMDLPAIMVSNMLAQDGHLLSG
QLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSALSQSQLISQMGIRSGIAHGSPSPPGSKSATPSP
SSSTQEEESDAHFKISGEKRPSVDPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATF
GDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSPPDQGEAKNTQANPPAKMLPPK
QPMYAMPGLASFLTPSDLQAFRSGASPASLARTLGSKALLPGLSTSPPPPSFPLSPSLHQQLPLPPHAQG
TLLSPPLSMSPAPQPPVLPASMALQVQLAMSPSPPGPQDFPHISDFSSGSGSRSPGPSNPSSSGDWDGSY
PSGERGLGTCRLCRGSPPPTTSPKNLQEPSAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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