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Report for CCDS5063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5063.1 Public Homo sapiens 6 NR2E1 24 110 108 CCDS HistoryNCBI Gene:7101Re-query CCDS DB by CCDS ID:5063.1Re-query CCDS DB by GeneID:7101See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368986.9 ENSP00000357982.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368986.9Link to Ensembl Protein Viewer:ENSP00000357982.5Re-query CCDS DB by Nucleotide ID:ENST00000368986Re-query CCDS DB by Protein ID:ENSP00000357982
Original member Current member NCBI NM_003269.5 NP_003260.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003269.5Link to Protein Sequence:NP_003260.1Re-query CCDS DB by Nucleotide ID:NM_003269Re-query CCDS DB by Protein ID:NP_003260Link to BLAST:NP_003260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003260.1 385 Q9Y466-1 385 100% 0 0

Chromosomal Locations for CCDS 5063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 108166766 108166790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108171458 108171603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108174836 108174923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108176503 108176738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108178095 108178241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108180323 108180419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108180807 108180956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108181546 108181651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108187301 108187463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGAGCAAGCCAGCCGGATCAACAAGCCGCATTTTAGATATCCCCTGCAAAGTGTGTGGCGACCGCAGCT
CGGGGAAGCACTACGGGGTCTACGCCTGCGACGGCTGCTCAGGTTTTTTCAAACGGAGCATCCGAAGGAA
TAGGACCTATGTCTGCAAATCTGGAAACCAGGGAGGCTGTCCGGTGGACAAGACGCACAGAAACCAGTGC
AGGGCGTGTCGGCTGAAGAAGTGTTTGGAAGTCAACATGAACAAAGACGCCGTGCAGCACGAGCGGGGGC
CTCGGACGTCCACCATCCGCAAGCAAGTGGCCCTCTACTTCCGTGGACACAAGGAGGAGAACGGGGCCGC
CGCGCACTTTCCCTCGGCGGCGCTCCCTGCGCCGGCCTTCTTCACCGCGGTCACGCAGCTGGAGCCGCAC
GGCCTGGAGCTGGCCGCGGTGTCCACCACTCCAGAGCGGCAGACCCTCGTGAGCCTGGCTCAGCCCACGC
CCAAGTACCCCCATGAAGTGAATGGGACCCCAATGTATCTCTATGAAGTGGCCACGGAGTCGGTGTGTGA
ATCAGCTGCCAGACTTCTCTTCATGAGCATCAAGTGGGCTAAGAGTGTGCCAGCCTTCTCCACGCTGTCT
TTGCAAGACCAGCTGATGCTTTTGGAAGATGCTTGGAGAGAACTGTTTGTTCTAGGAATAGCACAATGGG
CCATTCCGGTTGATGCTAACACTCTACTGGCTGTATCTGGCATGAACGGTGACAACACAGATTCCCAGAA
GCTGAACAAGATCATATCTGAAATACAGGCTTTACAAGAGGTGGTGGCTCGATTTAGACAACTCCGGTTA
GATGCTACTGAATTTGCCTGTCTAAAATGCATCGTCACTTTCAAAGCCGTTCCTACACATAGTGGTTCTG
AACTGAGAAGTTTCCGGAATGCTGCCGCCATTGCAGCCCTTCAAGATGAGGCTCAGCTAACGCTCAACAG
CTACATCCATACCAGATATCCCACTCAACCCTGTCGCTTTGGAAAACTCCTGTTGCTTTTGCCAGCTTTA
CGTTCTATTAGCCCATCAACTATAGAAGAAGTGTTTTTCAAAAAAACCATCGGCAATGTGCCAATTACAA
GACTGCTTTCAGATATGTACAAATCCAGTGATATCTAA

Translation (385 aa):
MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQC
RACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPH
GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
LQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRL
DATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPAL
RSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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