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Report for CCDS5060.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5060.2 Public Homo sapiens 6 SCML4 24 110 108 CCDS HistoryNCBI Gene:256380Re-query CCDS DB by CCDS ID:5060.2Re-query CCDS DB by GeneID:256380See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 5060.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369020.8 ENSP00000358016.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369020.8Link to Ensembl Protein Viewer:ENSP00000358016.3Re-query CCDS DB by Nucleotide ID:ENST00000369020Re-query CCDS DB by Protein ID:ENSP00000358016
Original member Current member NCBI NM_198081.5 NP_932347.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198081.5Link to Protein Sequence:NP_932347.2Re-query CCDS DB by Nucleotide ID:NM_198081Re-query CCDS DB by Protein ID:NP_932347Link to BLAST:NP_932347.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932347.2 414 Q8N228-1 414 100% 0 0

Chromosomal Locations for CCDS 5060.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107705200 107705325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107707866 107708011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107720703 107720993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107744949 107745143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107746689 107746889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107749684 107749813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107772172 107772327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGCAGTCTCAAAGGATCCCGGGGAGAAAGCGAGGCCGACCCTCACTTCACTCCACGCCTATGAAGATGG
CAGTTCATAACCTTTATTCTGCTTCAGCTGGCTCTTTACCAGCAGTGAAGATCCCAAAGAAAAGAGGGCG
GAAACCCGGGTACAAGATCAAGTCTCGGGTTCTCATGACTCCCTTAGCCCTCTCACCTCCGCGGAGTACC
CCAGAGCCCGACCTCAGCTCCATCCCTCAGGACGCAGCCACGGTCCCCAGCTTGGCGGCCCCACAGGCTC
TCACAGTCTGCCTCTACATCAACAAGCAGGCCAATGCGGGGCCCTATCTGGAGAGGAAGAAGGTGCAGCA
GCTCCCGGAGCATTTTGGGCCCGAGCGGCCATCGGCGGTGCTGCAGCAGGCCGTCCAAGCCTGCATCGAC
TGCGCCCACCAGCAGAAGCTGGTCTTCTCCCTGGTCAAGCAGGGCTATGGTGGTGAGATGGTGTCAGTCT
CGGCTTCCTTTGATGGCAAACAGCACCTGCGGAGCCTGCCTGTGGTGAACAGCATCGGCTATGTCCTCCG
CTTCCTCGCCAAGCTGTGCCGAAGCCTCCTGTGCGATGACCTCTTCAGCCACCAGCCCTTCCCCAGGGGC
TGCAGTGCCTCTGAGAAAGTCCAGGAGAAAGAGGAAGGGAGGATGGAATCAGTCAAGACAGTCACCACCG
AAGAGTACCTGGTGAACCCTGTGGGCATGAACCGCTACAGCGTGGACACCTCCGCCTCCACCTTTAACCA
CAGGGGCTCCTTGCACCCCTCCTCCTCGCTGTACTGCAAGAGGCAGAACTCTGGAGACAGCCACCTTGGG
GGTGGTCCTGCTGCCACCGCTGGTGGTCCCCGCACTAGCCCCATGTCTTCTGGTGGCCCCTCGGCACCTG
GGCTGAGGCCTCCAGCCTCCAGCCCCAAGAGAAACACGACCTCTCTTGAAGGAAACAGATGTGCCTCAAG
CCCTTCTCAGGATGCGCAGGATGCCAGGCGGCCACGGAGCAGGAACCCCTCCGCCTGGACTGTGGAGGAC
GTGGTGTGGTTTGTGAAGGACGCCGACCCACAGGCTCTGGGGCCTCACGTGGAGCTCTTCAGAAAGCACG
AGATTGATGGCAACGCTCTGCTGTTGCTGAAGAGTGACATGGTCATGAAGTACCTGGGCCTGAAGCTGGG
ACCTGCACTGAAACTCTGCTACCACATTGACAAACTGAAGCAAGCCAAGTTCTGA

Translation (414 aa):
MQSQRIPGRKRGRPSLHSTPMKMAVHNLYSASAGSLPAVKIPKKRGRKPGYKIKSRVLMTPLALSPPRST
PEPDLSSIPQDAATVPSLAAPQALTVCLYINKQANAGPYLERKKVQQLPEHFGPERPSAVLQQAVQACID
CAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRSLPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRG
CSASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLG
GGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQDARRPRSRNPSAWTVED
VVWFVKDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHIDKLKQAKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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