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Report for CCDS5051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5051.1 Public Homo sapiens 6 POPDC1 24 110 108 CCDS HistoryNCBI Gene:11149Re-query CCDS DB by CCDS ID:5051.1Re-query CCDS DB by GeneID:11149See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5051.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314641.10 ENSP00000313172.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314641.10Link to Ensembl Protein Viewer:ENSP00000313172.5Re-query CCDS DB by Nucleotide ID:ENST00000314641Re-query CCDS DB by Protein ID:ENSP00000313172
Original member Current member EBI ENST00000336775.9 ENSP00000337259.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336775.9Link to Ensembl Protein Viewer:ENSP00000337259.5Re-query CCDS DB by Nucleotide ID:ENST00000336775Re-query CCDS DB by Protein ID:ENSP00000337259
Original member Current member EBI ENST00000446408.2 ENSP00000397310.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446408.2Link to Ensembl Protein Viewer:ENSP00000397310.2Re-query CCDS DB by Nucleotide ID:ENST00000446408Re-query CCDS DB by Protein ID:ENSP00000397310
Original member Current member NCBI NM_001199563.2 NP_001186492.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199563.2Link to Protein Sequence:NP_001186492.1Re-query CCDS DB by Nucleotide ID:NM_001199563Re-query CCDS DB by Protein ID:NP_001186492Link to BLAST:NP_001186492.1
Original member Current member NCBI NM_007073.4 NP_009004.2 Accepted alive Link to Nucleotide Sequence:NM_007073.4Link to Protein Sequence:NP_009004.2Re-query CCDS DB by Nucleotide ID:NM_007073Re-query CCDS DB by Protein ID:NP_009004Link to BLAST:NP_009004.2
Original member Current member NCBI NM_147147.4 NP_671488.1 Accepted alive Link to Nucleotide Sequence:NM_147147.4Link to Protein Sequence:NP_671488.1Re-query CCDS DB by Nucleotide ID:NM_147147Re-query CCDS DB by Protein ID:NP_671488Link to BLAST:NP_671488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186492.1 360 Q8NE79 360 100% 0 0
NP_009004.2 360 Q8NE79 360 100% 0 0
NP_671488.1 360 Q8NE79 360 100% 0 0

Chromosomal Locations for CCDS 5051.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 105101089 105101213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105115686 105115827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105116701 105116868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105124547 105124655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105125391 105125578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105129379 105129503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105133352 105133577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGAATTATACAGAGTCCAGCCCATTGAGAGAATCAACTGCCATAGGTTTTACACCTGAGTTAGAAAGTA
TCATACCTGTGCCTTCCAATAAGACCACTTGTGAAAACTGGAGAGAGATACATCATCTGGTTTTTCATGT
AGCAAATATTTGTTTTGCAGTTGGGTTGGTTATTCCAACTACTCTTCACCTTCATATGATATTTCTTAGG
GGAATGTTAACTCTAGGATGTACCCTTTATATCGTCTGGGCCACTCTCTACCGATGTGCCTTGGATATAA
TGATCTGGAACTCTGTGTTCTTGGGTGTCAACATTTTGCATCTGTCGTATCTTTTATACAAGAAGAGACC
GGTAAAGATTGAAAAGGAACTCAGTGGCATGTACCGGCGATTGTTTGAACCACTCCGTGTGCCTCCAGAT
TTGTTCAGAAGACTAACTGGACAGTTTTGCATGATCCAAACCTTGAAAAAGGGCCAAACTTATGCTGCAG
AGGATAAAACCTCAGTTGATGACCGTCTGAGTATTCTCTTGAAGGGAAAAATGAAGGTCTCCTATCGAGG
ACATTTTCTGCATAACATTTACCCCTGTGCCTTTATAGATTCTCCTGAATTTAGATCAACTCAGATGCAC
AAAGGTGAAAAATTCCAGGTCACCATTATTGCAGATGATAACTGCAGATTTTTATGCTGGTCAAGAGAAA
GATTAACATACTTTCTGGAATCAGAACCTTTCTTGTATGAAATCTTTAGGTATCTTATTGGAAAAGACAT
CACAAATAAGCTCTACTCATTGAATGATCCCACCTTAAATGATAAAAAAGCCAAAAAGCTGGAACATCAG
CTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGAACAGTATAGCCAGCTCCAGTGACAGTGACG
ACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCATGTGTCATCCCCACACCAGCG
AGCCTCTGCCAAGATGAAACCGATAGAAGAAGGAGCAGAAGATGATGATGACGTTTTTGAACCGGCATCT
CCAAATACATTGAAAGTCCATCAGCTGCCTTGA

Translation (360 aa):
MNYTESSPLRESTAIGFTPELESIIPVPSNKTTCENWREIHHLVFHVANICFAVGLVIPTTLHLHMIFLR
GMLTLGCTLYIVWATLYRCALDIMIWNSVFLGVNILHLSYLLYKKRPVKIEKELSGMYRRLFEPLRVPPD
LFRRLTGQFCMIQTLKKGQTYAAEDKTSVDDRLSILLKGKMKVSYRGHFLHNIYPCAFIDSPEFRSTQMH
KGEKFQVTIIADDNCRFLCWSRERLTYFLESEPFLYEIFRYLIGKDITNKLYSLNDPTLNDKKAKKLEHQ
LSLCTQISMLEMRNSIASSSDSDDGLHQFLRGTSSMSSLHVSSPHQRASAKMKPIEEGAEDDDDVFEPAS
PNTLKVHQLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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