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Report for CCDS50509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50509.1 Public Mus musculus 2 Etl4 23 108 98 CCDS HistoryNCBI Gene:208618Re-query CCDS DB by CCDS ID:50509.1Re-query CCDS DB by GeneID:208618See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114604.8 ENSMUSP00000110251.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114604.8Link to Ensembl Protein Viewer:ENSMUSP00000110251.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114604Re-query CCDS DB by Protein ID:ENSMUSP00000110251
Original member Current member NCBI NM_001177630.2 NP_001171101.2 Accepted alive Link to Nucleotide Sequence:NM_001177630.2Link to Protein Sequence:NP_001171101.2Re-query CCDS DB by Nucleotide ID:NM_001177630Re-query CCDS DB by Protein ID:NP_001171101Link to BLAST:NP_001171101.2

Chromosomal Locations for CCDS 50509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20519858 20519927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20529959 20530242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20661898 20662096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20709405 20709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20713355 20713448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20743459 20744291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20759547 20759651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20760215 20760264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20766445 20766611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20778026 20778201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20780942 20781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20781798 20781945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20785044 20785500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20788428 20788611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20797877 20798031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20798616 20798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20807902 20808024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20808710 20809210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4044 nt):
ATGGAAGAAAGCGAAGGCCAGAAATGTGAGCCGAACCTGCCTCCCTCCGGAGACAGCAGACAGATGCCCC
AACAAGGGAGAAGCAATCTTCATGTAACATCTCAGGAAGATGCAGCATGCCGCAGGCCCAGGGAACGCCT
TTCTAATGGAAACGCCAGGGCTCAGGTTTCCAAGCCTGCCCGAAATATCCCAAGGAGACACACTCTAGGT
GGGCCCCGAAGTTCCAAAGAGATCCTGGGAATGCAGCCATCTGAGATGGACAGGAAGAGAGAGGCGTTCC
TAGAACATCTAAAGCAGAAGTACCCCCACCATGCCACAGCCATCATGGGCCACCAGGAGAGGCTGAGGGA
CCAGACAAAAAGTCCCAAGCTGTCCCACAGTCCTCAACCTCCCAATTTGGGGGATCCGGTTGAACATTTA
TCAGAGACATCTGGTGACTCTTTGGAAGCCATGTCCGAGGGAGAAGTACCGAGTCCTTTCGCCAGAGGCA
GTCGTACTCGCGCGAGCCTTCCCGTGGTGAGGTCGGCCAATCAAACAAAGGAAAGATCCCTGGGTGTCCT
CTACCTCCAGTATGGAGACGAAACCAAACAGCTGCGGATGCCGAATGAAGTCACAAGCACAGACACAATC
CGAGCTCTCTTCGTCAGTGCCTTTCCCCAGCAGCTCACCATGAAGATGCTGGAGTCGCCCAGTGTTGCCA
TCTACATCAAGGATGACAGCAGAAATGTCTACTATGAGTTAAATGATGTGAGGAATATCCAAGACAGATC
CCTTCTCAAAGTATACAACAAGGATCCTTCACATGCATTTAACCACATGACGAAAGCCGTGAACGGAGAC
ATGAGGATGCAGAGAGAAATTGTTTATGCAAGAGGAGATGGGCTTGTTGCCCCCCGACCAGGATCTGTGG
CTCACCCACCTCATGTAATTCCAAACTCCCCACCATCAACTCCGGTGCCCCATTCCTTACCTCCCTCTCC
ATCCAGAATTCCTTACGGGGGCAGCCGTCCAATGGCTATTCCTGGCAATGCCACCATCCCCAGGGACAGA
CTCTCGAGCCTGCCAGTATCCAGATCCATCTCCCCAAGCCCCAGCGCCATTTTGGAAAGAAGAGATGTCA
AACCGGATGAAGACATGAGCAGCAAAAACCTGGTTATGTTCAGAAATGAGGGTTTCTATGCCGACCCTTA
CCTCTATCATGAAGGACGAATGAGCATAGCCTCATCCCATGGCGGCCACCCTTTGGATGTCCCAGATCAT
GTCATTGCGTATCACCGCACAGCGATCCGGTCAGCGAGTGCTTACTGTAGCCCTTCCTTGCAAGCAGAAA
TGCATATGGAGCAGTCGTTATACAGACAAAAGTCAAGGAAATACCCTGATAGCCATTTGCCTACCTTGGG
CTCCAAAACGCCCCCAGCCTCTCCACACCGTGTGGGTGACTTAAGAATGATAGACCTGCACCCGCATCTT
AACACACATGGGCCCCCTCACACTCTGCAGCCAGACCGGGCCTCCCCCAGTCGCCAGTCCTTTAAAAAGG
AACCCGGCACCCTGGTGTACATCGAAAAGCCACGAAACACTTCAGGATTATCCAGCCTTGTAGACCTGGG
GCCTCCTCTAGTTGAGAAGCAAGGTTTTGCTTACAGCACCACTACAATCCCCAAAGACAGAGAAACCAGA
GAGAGGATGCAAGCCATGGAGAAGCAGATTGCCAGTCTAACTGGCCTTGTTCAGTCTGCGCTTTTTAAAG
GGCCCATTACAAGTAGTAGCAAAGAGGCGTCTAGTGAGAAAATGGTGAAAGCCACAGCCAACAGGAACCA
AGCAGATGGTGCAGGAACGGCCCATGTTTCTGCAGGGAAGGTTCTGGGCTCTGTGGAGTTCTCCCTGCCG
CCCAGCCAACCCCTGCCTGCCGGAACCTCGCCCATCCACACTAGCCTGCTTGACATGAGGAGGAACGTGG
CTGAACTCAGGCTCCAACTCCAGCAGATGAGGCAGCTCCAGCTGCAGAACCAGGAGATTCTGAGGGCGAT
GATGAAGAAGGCTGAGCTGGAAATCAGTAACAAAGTGAAGGAGACCATGAAGAGACTAGAGGATCCGGTA
CAGCGTCAGCGCACCCTGGTGGAGCAAGAGAGACAGAAGTACCTCCACGAAGAAGAGCGGATTGTCAAAA
AGTTATGTGAGCTGGAGGACTTTGTTGAGGACTTGAAGAAGGACTCTTCCTCCACTGGCAGAGTGGTGAC
CCTGAAAGATGTGGAAGATGGGGCTTTCCTCCTGCGACAAGTGGGAGAAGCTGTGGCCACTCTCAAAGGA
GAATTTCCAACTTTGCAAAATAAGATGCGTGCTGTCCTGCGCATAGAAGTTGAGGCAGTAAGGTTCCTGA
AGGAAGAGCCACACAAGCTGGACAGTCTCCTGAAGCGTGTGAGGAGCATGACAGATGTCTTGACGATGTT
GCGGAGGCATGTCACTGATGGGCTCCTGAAAGGCACCGATGCATCCCAGGCTGCACAGTATGTTGCCATG
GAGAAGGCCACAGCTGCAGAGGTCCTGAAGCATCAGGAAGAGACAGCCCATGCCCCTGGGCAACCCCTCC
ACTGTAGCACTGGAAGCCCTGGCGATGTGAAGTCAGAAGTGGTGCCCCTATCCACCATGACAGTTCACCA
TGTACAGAGCTCGCCTGTGGTCATGCAACCTTCCCAGCACTCCTCAGCCTTGATGAACCCAGCCCAGAAC
TTGCCTGGAGGAACCAGACCTCACACAGCCAGCCCTCCAGCAATCACACAGGAAGTAACCTCTGCCCAGT
CAGCTCCAGGCCCCCAGTCCCCTCAGACCCCAGTGAATGGTTCCTCCATGCAGAGCTTGTTCATTGAGGA
AATTCACAGTGTGAGTGCCAAGAACAGGGCAGTGTCCATTGAGAAGGCAGAAAAGAAATGGGAAGAAAAA
AGGCAAAATCTGGAACACTATAACGGAAAGGAGTTCGAGAAGCTCCTGGAGGAAGCTCAGGCCAACATCA
TGAAGTCAATTCCAAACCTGGAGATGCCCCCAGCTTCCAGCCCAGTGTCAAAGGGAGATGCGGCAGGGGA
TAAGCTGGAGCTGTCAGAAGATTCTCCAAATTCAGAGCAGGAATTGGACAAGATAGGGGGAAAGTCACCC
CCTCCTCCACCCCCACCCCCTCGGAGAAGCTACCTTCCTGGATCAGGACTTACCACCACGAGATCAGGCG
ATGTGGTCTACACTGGCAGGAGCATGTCTAAGGTGAGCAGTGAAGACCCTGGGCCAACACCACAGACTAG
AGCCACAAAATGTCCCCCGGAGGAACCTGCCTCAGCCTGGGCCCCATCCCCACCACCAGTCCCTGCCCCT
TCCTCCAAGGAGGAGGAGGAAGAAGAAGAAGAAGGAGACAAAATCATGGCAGAACTCCAGGGCTCCAGCA
CCACCCCACAGACAAGCCGGATGCCAGTCCCCATGACTTCCAAGAACAGACCCGGAAGCCTGGATAAGGC
CAGCAAGCAGTCCAAACTACAGGATCCCCGCCAATACCGTCAGGCTAATGGAAGTGCTAAGAAAGCTGGT
GGGGACTGTAAGCCTACTTCCCCCTCCTTACCTGCTTCTAAGATTCCAGCCCTTTCTCCCAGCTCTGGGA
AAAGCAGTTCTCTGCCTTCCGCTAGTGGGGACAGCTCTAACCTCCCCAATGCACCTGCTACTAAACCATC
GATTGCTTCTACCCCTCTCAGCCCCCAAGCAGGACGGTCCGCTCACTCCGCTTCCCTCATCCCTTCTGTC
TCTAATGGCTCCTTAAAGTTTCAGAGCCCACCTCACGCAGGTAAAGGCCATCATCACCTTTCGTTCGCAC
TGCAGACTCAAAATGGCCGAGCTGCCCCTACTACCTCTTCCTCCTCATCCCCTCCTTCCCCTGCCTCCCC
CACCTCCCTGAATCAAGGTGCCAGGGGCATCAGGACCATCCATACTCCTAGCCTCGCCAGCTACAAAGCA
CAGAATGGAAGTTCAAGCAAAGCCACCCCATCCACAGCAAAAGAAACGTCTTAA

Translation (1347 aa):
MEESEGQKCEPNLPPSGDSRQMPQQGRSNLHVTSQEDAACRRPRERLSNGNARAQVSKPARNIPRRHTLG
GPRSSKEILGMQPSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTKSPKLSHSPQPPNLGDPVEHL
SETSGDSLEAMSEGEVPSPFARGSRTRASLPVVRSANQTKERSLGVLYLQYGDETKQLRMPNEVTSTDTI
RALFVSAFPQQLTMKMLESPSVAIYIKDDSRNVYYELNDVRNIQDRSLLKVYNKDPSHAFNHMTKAVNGD
MRMQREIVYARGDGLVAPRPGSVAHPPHVIPNSPPSTPVPHSLPPSPSRIPYGGSRPMAIPGNATIPRDR
LSSLPVSRSISPSPSAILERRDVKPDEDMSSKNLVMFRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDH
VIAYHRTAIRSASAYCSPSLQAEMHMEQSLYRQKSRKYPDSHLPTLGSKTPPASPHRVGDLRMIDLHPHL
NTHGPPHTLQPDRASPSRQSFKKEPGTLVYIEKPRNTSGLSSLVDLGPPLVEKQGFAYSTTTIPKDRETR
ERMQAMEKQIASLTGLVQSALFKGPITSSSKEASSEKMVKATANRNQADGAGTAHVSAGKVLGSVEFSLP
PSQPLPAGTSPIHTSLLDMRRNVAELRLQLQQMRQLQLQNQEILRAMMKKAELEISNKVKETMKRLEDPV
QRQRTLVEQERQKYLHEEERIVKKLCELEDFVEDLKKDSSSTGRVVTLKDVEDGAFLLRQVGEAVATLKG
EFPTLQNKMRAVLRIEVEAVRFLKEEPHKLDSLLKRVRSMTDVLTMLRRHVTDGLLKGTDASQAAQYVAM
EKATAAEVLKHQEETAHAPGQPLHCSTGSPGDVKSEVVPLSTMTVHHVQSSPVVMQPSQHSSALMNPAQN
LPGGTRPHTASPPAITQEVTSAQSAPGPQSPQTPVNGSSMQSLFIEEIHSVSAKNRAVSIEKAEKKWEEK
RQNLEHYNGKEFEKLLEEAQANIMKSIPNLEMPPASSPVSKGDAAGDKLELSEDSPNSEQELDKIGGKSP
PPPPPPPRRSYLPGSGLTTTRSGDVVYTGRSMSKVSSEDPGPTPQTRATKCPPEEPASAWAPSPPPVPAP
SSKEEEEEEEEGDKIMAELQGSSTTPQTSRMPVPMTSKNRPGSLDKASKQSKLQDPRQYRQANGSAKKAG
GDCKPTSPSLPASKIPALSPSSGKSSSLPSASGDSSNLPNAPATKPSIASTPLSPQAGRSAHSASLIPSV
SNGSLKFQSPPHAGKGHHHLSFALQTQNGRAAPTTSSSSSPPSPASPTSLNQGARGIRTIHTPSLASYKA
QNGSSSKATPSTAKETS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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