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Report for CCDS50507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50507.1 Public Mus musculus 2 Nsun6 23 108 98 CCDS HistoryNCBI Gene:74455Re-query CCDS DB by CCDS ID:50507.1Re-query CCDS DB by GeneID:74455See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114713.1 ENSMUSP00000110361.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114713.1Link to Ensembl Protein Viewer:ENSMUSP00000110361.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114713Re-query CCDS DB by Protein ID:ENSMUSP00000110361
Original member Current member NCBI NM_001165942.1 NP_001159414.1 Accepted alive Link to Nucleotide Sequence:NM_001165942.1Link to Protein Sequence:NP_001159414.1Re-query CCDS DB by Nucleotide ID:NM_001165942Re-query CCDS DB by Protein ID:NP_001159414Link to BLAST:NP_001159414.1

Chromosomal Locations for CCDS 50507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 15038191 15038227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15042227 15042306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15047148 15047303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15048922 15048996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGTATGTATTTCCAAAGATATCTTTGAGACCTGAAGTTGAAAACTATCTCAAAGAGAGCTTTTTGAACG
AGGAGGCTGTGTCTGCTTCAAGCAGACAAGAAGCAGAAAGGAAATTTGAGACTCTGCTGCTTCGCCTGTC
ACACCCTCCGTCGATGACAACTGTCAGAGTGAATACGCATTTAGGCTCAGTTCAGCATGTCAGAGGTCTG
CTGCTTGAAGAGCTCCAGAAGCAGTTTGGTGAATCCAGCATTCCTGTTGTTCAGCATCCAGCCCTCCCGG
ATGTCTTGCTCATCCCCATGACTGGACCAAGTTATGAAAGCTGGAGATGTTATTTCCGTGTATTCTGA

Translation (115 aa):
MYVFPKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSVQHVRGL
LLEELQKQFGESSIPVVQHPALPDVLLIPMTGPSYESWRCYFRVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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