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Report for CCDS50490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50490.1 Public Mus musculus 2 Ucma 23 108 98 CCDS HistoryNCBI Gene:68527Re-query CCDS DB by CCDS ID:50490.1Re-query CCDS DB by GeneID:68527See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167607.7 ENSMUSP00000126371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167607.7Link to Ensembl Protein Viewer:ENSMUSP00000126371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167607Re-query CCDS DB by Protein ID:ENSMUSP00000126371
Original member Current member NCBI NM_001165932.1 NP_001159404.1 Accepted alive Link to Nucleotide Sequence:NM_001165932.1Link to Protein Sequence:NP_001159404.1Re-query CCDS DB by Nucleotide ID:NM_001165932Re-query CCDS DB by Protein ID:NP_001159404Link to BLAST:NP_001159404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159404.1 105 Q14BU0-3 105 100% 0 0

Chromosomal Locations for CCDS 50490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4976252 4976309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4976655 4976720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4976810 4976905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4985314 4985411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGTCCTGGAGACGGGTCATTCTCCTGTCATCTCTCTTGGCCCTGGTGCTCCTGTGTATGCTACAGGAGG
GGACCAGCGCTTCTGTGGGGAGCAGGCAGGCAGCTGCAGAGGGGGTGCAGGAAGGTGTGAAACAGAAGAT
TTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGAT
GAAGTTAATGAGCAGGAAGAGAGGACCCGGGAGGCTGTGGAGCAGTGGCGCCAGTGGCATTATGATGGCC
TGTATCCTTCCTACCTCTACAACCGCCAAAACATCTGA

Translation (105 aa):
MSWRRVILLSSLLALVLLCMLQEGTSASVGSRQAAAEGVQEGVKQKIFMQESDASNFLKRRGKRSPKSRD
EVNEQEERTREAVEQWRQWHYDGLYPSYLYNRQNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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