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Report for CCDS50467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50467.1 Public Mus musculus 19 Add3 23 108 98 CCDS HistoryNCBI Gene:27360Re-query CCDS DB by CCDS ID:50467.1Re-query CCDS DB by GeneID:27360See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050096.14 ENSMUSP00000052245.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050096.14Link to Ensembl Protein Viewer:ENSMUSP00000052245.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050096Re-query CCDS DB by Protein ID:ENSMUSP00000052245
Original member Current member EBI ENSMUST00000111741.9 ENSMUSP00000107370.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111741.9Link to Ensembl Protein Viewer:ENSMUSP00000107370.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111741Re-query CCDS DB by Protein ID:ENSMUSP00000107370
Original member Current member EBI ENSMUST00000237832.1 ENSMUSP00000157432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237832.1Link to Ensembl Protein Viewer:ENSMUSP00000157432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237832Re-query CCDS DB by Protein ID:ENSMUSP00000157432
Original member Current member EBI ENSMUST00000235846.1 ENSMUSP00000157970.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235846.1Link to Ensembl Protein Viewer:ENSMUSP00000157970.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235846Re-query CCDS DB by Protein ID:ENSMUSP00000157970
Original member Current member EBI ENSMUST00000238130.1 ENSMUSP00000158154.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238130.1Link to Ensembl Protein Viewer:ENSMUSP00000158154.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238130Re-query CCDS DB by Protein ID:ENSMUSP00000158154
Original member Current member EBI ENSMUST00000237224.1 ENSMUSP00000158368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237224.1Link to Ensembl Protein Viewer:ENSMUSP00000158368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237224Re-query CCDS DB by Protein ID:ENSMUSP00000158368
Original member NCBI NM_001164100.2 NP_001157572.1 Updated not alive Link to Nucleotide Sequence:NM_001164100.2Link to Protein Sequence:NP_001157572.1Re-query CCDS DB by Nucleotide ID:NM_001164100Re-query CCDS DB by Protein ID:NP_001157572
Current member NCBI NM_001164100.3 NP_001157572.1 Accepted alive Link to Nucleotide Sequence:NM_001164100.3Link to Protein Sequence:NP_001157572.1Re-query CCDS DB by Nucleotide ID:NM_001164100Re-query CCDS DB by Protein ID:NP_001157572Link to BLAST:NP_001157572.1
Original member NCBI NM_001164101.2 NP_001157573.1 Updated not alive Link to Nucleotide Sequence:NM_001164101.2Link to Protein Sequence:NP_001157573.1Re-query CCDS DB by Nucleotide ID:NM_001164101Re-query CCDS DB by Protein ID:NP_001157573
Current member NCBI NM_001164101.3 NP_001157573.1 Accepted alive Link to Nucleotide Sequence:NM_001164101.3Link to Protein Sequence:NP_001157573.1Re-query CCDS DB by Nucleotide ID:NM_001164101Re-query CCDS DB by Protein ID:NP_001157573Link to BLAST:NP_001157573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157572.1 674 Q9QYB5-2 674 100% 0 0
NP_001157573.1 674 Q9QYB5-2 674 100% 0 0

Chromosomal Locations for CCDS 50467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53216821 53217015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53226591 53226729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53231180 53231331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53232124 53232204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53233026 53233175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53233573 53233716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53233825 53233923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53234779 53234961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53236594 53236851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53238403 53238522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53239407 53239493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53242504 53242627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53244998 53245290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGAGTTCCGACACCAGCCCAGCTGTGGTTACCACGCCTCCTCCTCCCAGCATGCCTCACAAAGAGAGGT
ATTTTGACCGAATCAATGAAAGTGATCCGGAATACCTTCGAGAGAGGAACATGTCTCCTGATCTACGACA
GGACTTCAATATGATGGAGCAGAGGAAGCGAGTCACTCAGATCCTGCAGAGCCCTGCCTTTCGGGAAGAC
CTGGAATGCCTCATCCAAGAGCAGATGAAGAAAGGCCACAACCCAAGCGGCTTATTAGCGTTACAGCAGA
TTGCGGATTACATCGTGACCAGCTCCTTCTCGGGCTTCTCCTCGCCCTCCCTGAGTCTTGGCATGGTCAC
ACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAA
CTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCGGTAC
GAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTC
CACTTTGGTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCAC
ACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACA
CCCTTGCCACAGCAGCGGTGTCCTCCATGAAGTGTGGGATCCTTCCAATTTCCCAAGAGTCTCTCATCCT
GGGAGATGTCGCCTACTATGACTACCAGGGGTCGCTTGATGAGGAGGAAGAAAGAATTGAACTTCAGAAA
GTGCTGGGTCCAAGCTGTAAGGTGCTCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCG
AGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGGTGCAGGCAGTAGCAGGGGC
AGGCGGAGTAGACAATCTGCTCGTACTGGATCTTCAGAAATATAAAGCTTTCACCCACGGTGTCGCCATG
TCTGGAGGAGGCGGTGTAAACATGGCTTCCCATCAGAAGTGGAAGGTTGGCGAGATTGAGTTTGAAGGGC
TGATGAGGACCCTGGACAACTTGGGCTACAGAACAGGCTATGCGTACAGGCATCCTCTGGTCCGAGAGAA
GCCTAGGCACAAGAGTGACGTGGAGATCCCTGCAACCGTGACTGCCTTCTCCTTTGAAGATGACAGTGCT
CCACTCTCTCCCCTCAAGTTCATGGCACAGAGACAGCAGCGTGAAAAAACAAGATGGCTGAATTCACCAA
ATACTTACATGAAGGTGAATGTGCCGGAGGAGTCTCGGAACGGGGAAACTAGTCCCAGGACCAAAATCAC
GTGGATGAAAGCAGAAGACTCCTCTAAAGTCAGTAGTGGGACACCGATCAAAATTGAAGACCCCAATCAG
TTTGTTCCTTTAAACACAAACCCGACGGAGGTGCTAGAAAAGAGAAATAAGATCCGGGAACAGAATCGCT
ATGATCTGAAGACAGCAGGGCCGCAGTCTCAGCTGCTGGCGGGGATCGTTGTGGACAAGCCGCCTTCGAC
CATGCAGTTTGACGATGACGATCAGGGCCCACCAGCTCCTCCTAACCCATTCAGCCACCTCCTGGAAGGA
GAACTGGAAGAGTATACGAAGACAATCGAGAGAAAGCAGCAAGGCCTGGACGAAAACCACGAGCTGTTTT
CCAAGAGCTTCACCTCCATGGACGCGCCTGTCATGATCATGAACGGCAAGGACGAGATGCATGATGTCGA
AGACGAGCTTGCTCAGCGAGTCAGTAGGCTGACCACAAGCACGACCATAGAGAACATCGAGATCACCATT
AAGTCCCCAGAAAGAACTGAAGAGGTCCTGTCGCCTGATGGCTCACCTTCAAAGTCGCCCTCCAAGAAAA
AGAAGAAATTCCGCACGCCTTCTTTTCTCAAAAAGAACAAAAAAAAGGAGAAAGTTGAGGCCTAA

Translation (674 aa):
MSSDTSPAVVTTPPPPSMPHKERYFDRINESDPEYLRERNMSPDLRQDFNMMEQRKRVTQILQSPAFRED
LECLIQEQMKKGHNPSGLLALQQIADYIVTSSFSGFSSPSLSLGMVTPINDLPGADTSSYVKGEKLTRCK
LASLYRLADLFGWAHLANTYISVRISKEQDHIIIIPRGLSFSEATASTLVKVNIIGEVVDQGSTDLKIDH
TGFSPHAAIYSTRPDVKCVIHIHTLATAAVSSMKCGILPISQESLILGDVAYYDYQGSLDEEEERIELQK
VLGPSCKVLVLRNHGMVALGETLEEAFHYIFNVQMACEIQVQAVAGAGGVDNLLVLDLQKYKAFTHGVAM
SGGGGVNMASHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLVREKPRHKSDVEIPATVTAFSFEDDSA
PLSPLKFMAQRQQREKTRWLNSPNTYMKVNVPEESRNGETSPRTKITWMKAEDSSKVSSGTPIKIEDPNQ
FVPLNTNPTEVLEKRNKIREQNRYDLKTAGPQSQLLAGIVVDKPPSTMQFDDDDQGPPAPPNPFSHLLEG
ELEEYTKTIERKQQGLDENHELFSKSFTSMDAPVMIMNGKDEMHDVEDELAQRVSRLTTSTTIENIEITI
KSPERTEEVLSPDGSPSKSPSKKKKKFRTPSFLKKNKKKEKVEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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