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Report for CCDS50462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50462.1 Public Mus musculus 19 Nt5c2 23 108 98 CCDS HistoryNCBI Gene:76952Re-query CCDS DB by CCDS ID:50462.1Re-query CCDS DB by GeneID:76952See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172239.2 ENSMUSP00000130898.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172239.2Link to Ensembl Protein Viewer:ENSMUSP00000130898.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172239Re-query CCDS DB by Protein ID:ENSMUSP00000130898
Original member NCBI NM_001164363.1 NP_001157835.1 Updated not alive Link to Nucleotide Sequence:NM_001164363.1Link to Protein Sequence:NP_001157835.1Re-query CCDS DB by Nucleotide ID:NM_001164363Re-query CCDS DB by Protein ID:NP_001157835
Current member NCBI NM_001164363.2 NP_001157835.1 Accepted alive Link to Nucleotide Sequence:NM_001164363.2Link to Protein Sequence:NP_001157835.1Re-query CCDS DB by Nucleotide ID:NM_001164363Re-query CCDS DB by Protein ID:NP_001157835Link to BLAST:NP_001157835.1

Chromosomal Locations for CCDS 50462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46888818 46889051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46889770 46889946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46890069 46890129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46890246 46890297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46891509 46891679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46892235 46892301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46892505 46892612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46893519 46893560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46894521 46894604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46896508 46896561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46897576 46897669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46898622 46898679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46898803 46898894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46903878 46903973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46904975 46905092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46924262 46924335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46950846 46950965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47014698 47014756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGGTGCCGGGGTCGGGGCCGGGTGCGCGGCTGCGGCGGGACCTGGCGAGGACGCGAAGAATTCATCCTA
CAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAA
GCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCGGGTGTTTGTGAACCGAAGTTTAGCCATGGAA
AAAATAAAGTGTTTTGGTTTTGATATGGATTATACCCTAGCCGTGTACAAGTCTCCAGAATATGAATCCC
TTGGCTTTGAGCTTACTGTGGAGAGATTAGTTTCCATTGGCTATCCTCAGGAGCTGCTCAGCTTTGCATA
TGATTCTACATTCCCTACCAGAGGACTTGTCTTTGACACGCTCTATGGAAATCTTTTGAAAGTCGATGCC
TATGGAAACCTCTTGGTGTGTGCACATGGATTTAACTTCATAAGAGGACCAGAAACTAGAGAGCAGTATC
CAAATAAATTTATCCAACGAGATGACACTGAACGGTTTTACATTCTGAACACACTATTCAATCTCCCAGA
GACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAGTTGTGACACAGGA
TTTAAAGATGGGGACCTCTTCATGTCCTACCGTAGCATGTTCCAGGACGTAAGAGACGCAGTGGACTGGG
TCCATTACAAGGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGATGGCAA
GTTGCCGTTGCTTCTGAGCCGAATGAAGGAAGTAGGGAAAGTGTTTCTGGCTACTAACAGTGACTATAAG
TACACAGATAAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAGCCCGGGAGCTCCCACCGGC
CGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGT
GCTGCGTCAGGTGGACACTAAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGC
ATTGTCTACTCAGGGGGTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGT
ATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGT
GATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTTCACTCTTTGAAGAACTTCAAAGC
TTGGATATTTTCTTGGCTGAACTCTACAAGCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTT
CCATCCAGAGACGGATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTT
CCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCG
TTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGATGCCGCACGAGT
CAACGGTGGAACACACGCATGTGGATATCAATGAGATGGAGTCCCCTCTCGCCACCCGGAACCGCACGTC
AGTGGATTTCAAAGACACTGACTATAAGCGACACCAGCTTACAAGGTCCATTAGTGAGATCAAGCCCCCC
AACCTCTTCCCGCTGGCCCCCCAGGAGATCACACACTGCCATGATGAAGATGATGATGAAGAGGAAGAAG
AGGAAGAATAG

Translation (586 aa):
MVPGSGPGARLRRDLARTRRIHPTNKMTTSWSDRLQNAADVPANMDKHALKKYRREAYHRVFVNRSLAME
KIKCFGFDMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDA
YGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCDTG
FKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGKVFLATNSDYK
YTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHG
IVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQS
LDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYADLYAAS
FINLLYYPFSYLFRAAHVLMPHESTVEHTHVDINEMESPLATRNRTSVDFKDTDYKRHQLTRSISEIKPP
NLFPLAPQEITHCHDEDDDEEEEEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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