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Report for CCDS50443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50443.1 Public Mus musculus 19 Cutc 23 108 98 CCDS HistoryNCBI Gene:66388Re-query CCDS DB by CCDS ID:50443.1Re-query CCDS DB by GeneID:66388See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112047.9 ENSMUSP00000107678.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112047.9Link to Ensembl Protein Viewer:ENSMUSP00000107678.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112047Re-query CCDS DB by Protein ID:ENSMUSP00000107678
Original member Current member NCBI NM_001113562.1 NP_001107034.1 Accepted alive Link to Nucleotide Sequence:NM_001113562.1Link to Protein Sequence:NP_001107034.1Re-query CCDS DB by Nucleotide ID:NM_001113562Re-query CCDS DB by Protein ID:NP_001107034Link to BLAST:NP_001107034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107034.1 272 Q9D8X1 272 100% 0 0

Chromosomal Locations for CCDS 50443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43753163 43753220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43755620 43755691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43758728 43758787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43759850 43760059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43760689 43760724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43762873 43763006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43764960 43764987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43767201 43767306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43768175 43768289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGAAGAAAGGGGCTTCTTGCGAGCGGAAACAGGCGTGGATATCGTCGGGGAAGGCGGGAGCAGGAAATG
GATTTCTTATGGAAGTGTGTGTAGATTCGGTGGAGTCCGCTGTGAATGCAGAAAGAGGAGGTGCTGGTCG
GATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGGGTGTTCTTCAAGTAGTAAAA
CAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTG
AAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGC
ATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAGCTCTTTGCCGCCCTCTGCCG
GTCACTTTCCACAGAGCCTTTGATATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCCTAACCTTAG
GATTTGAACGCGTCCTGACCAGTGGATGCGACAGCTCAGCACTGGAAGGACTGCCTCTAATAAAGCAACT
CATAGACCAGGCAAAAGGCAGGATTGTGGTAATGCCAGGAGGTGGAATAACAGATAAAAATCTGCAAAGG
ATCCTTGAGGGTTCCGGTGCTACAGAATTCCACTGCTCTGCCCGATCTTCCAGAGACTCAGGAATGAAGT
TTCGAAATTCCTCTGTCGCAATGGGAGCTTCGCTTGCTCATTCAGAATATTCTCTAAAGGTAACAGATGT
GACAAAAGTAAGGACTTTGAATGCAATTGCAAAGGACGTCCTAGTTTAG

Translation (272 aa):
MKKGASCERKQAWISSGKAGAGNGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVK
QSVQIPVFVMIRPRGGDFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCLSLVALCRPLP
VTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALEGLPLIKQLIDQAKGRIVVMPGGGITDKNLQR
ILEGSGATEFHCSARSSRDSGMKFRNSSVAMGASLAHSEYSLKVTDVTKVRTLNAIAKDVLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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