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Report for CCDS504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
504.1 Public Homo sapiens 1 DPH2 24 110 108 CCDS HistoryNCBI Gene:1802Re-query CCDS DB by CCDS ID:504.1Re-query CCDS DB by GeneID:1802See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255108.8 ENSP00000255108.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255108.8Link to Ensembl Protein Viewer:ENSP00000255108.3Re-query CCDS DB by Nucleotide ID:ENST00000255108Re-query CCDS DB by Protein ID:ENSP00000255108
Original member Current member NCBI NM_001384.5 NP_001375.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384.5Link to Protein Sequence:NP_001375.2Re-query CCDS DB by Nucleotide ID:NM_001384Re-query CCDS DB by Protein ID:NP_001375Link to BLAST:NP_001375.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001375.2 489 Q9BQC3-1 489 100% 0 0

Chromosomal Locations for CCDS 504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43970176 43970322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43970596 43970708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43970966 43971189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43971387 43972070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43972158 43972334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43972415 43972539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAGTCGATGTTTAGCAGCCCTGCCGAGGCGGCGCTGCAGCGAGAGACCGGGGTGCCAGGACTGCTTA
CTCCTCTTCCGGACCTGGACGGAGTGTACGAGCTGGAGCGAGTCGCTGGATTTGTCCGCGACCTGGGGTG
TGAACGAGTTGCCTTGCAGTTCCCTGACCAGCTATTGGGAGATGCTGTGGCTGTGGCTGCACGACTGGAG
GAGACGACAGGGTCAAAGATGTTCATTCTGGGTGACACAGCCTACGGCAGCTGCTGCGTGGATGTGCTGG
GTGCTGAGCAAGCTGGAGCTCAGGCTCTCATACATTTTGGCCCTGCCTGCTTAAGCCCTCCAGCCCGCCC
ACTGCCCGTTGCCTTCGTGCTTCGTCAACGTTCTGTGGCCTTGGAGCTCTGTGTCAAGGCCTTTGAGGCC
CAGAACCCAGACCCCAAAGCGCCTGTGGTGCTGCTGAGTGAGCCGGCCTGTGCCCATGCCCTGGAGGCTT
TGGCTACTCTCCTGCGCCCACGGTACCTGGACCTGCTAGTCTCCAGCCCAGCTTTTCCCCAACCAGTGGG
TTCCCTGAGTCCAGAGCCTATGCCCCTAGAGCGTTTTGGGCGCCGCTTCCCCCTTGCCCCAGGGAGGCGT
CTAGAAGAGTATGGTGCCTTCTATGTAGGGGGCTCTAAGGCCAGCCCTGACCCAGACCTTGACCCAGACC
TGAGTCGGCTGCTCTTGGGGTGGGCACCAGGTCAACCCTTCTCCTCCTGCTGTCCAGATACAGGGAAGAC
TCAGGATGAGGGTGCCCGGGCTGGACGGCTAAGGGCACGAAGACGATATCTGGTAGAGAGGGCCAGAGAT
GCCCGCGTGGTAGGGCTGCTGGCAGGCACACTGGGTGTAGCCCAACACCGTGAGGCACTGGCCCACTTGC
GGAACCTGACTCAGGCTGCTGGCAAGCGTAGCTATGTGTTGGCCCTGGGGCGGCCCACCCCTGCCAAGCT
TGCCAACTTCCCTGAGGTGGATGTCTTTGTGCTATTAGCCTGTCCTCTGGGTGCTCTAGCCCCCCAGCTT
TCTGGTAGCTTCTTCCAGCCTATACTGGCACCATGTGAGCTGGAAGCTGCCTGCAACCCTGCCTGGCCAC
CTCCAGGCCTGGCTCCCCACCTCACACATTATGCGGACTTATTGCCTGGCTCTCCCTTCCACGTGGCTCT
CCCACCACCTGAGTCAGAGCTGTGGGAAACCCCAGACGTGTCACTCATTACTGGAGATCTCCGACCCCCA
CCTGCCTGGAAGTCATCAAATGATCATGGAAGCTTGGCTCTGACCCCACGGCCCCAGCTGGAGCTGGCTG
AGAGCAGTCCTGCAGCCTCATTCCTTAGTTCCCGGAGCTGGCAAGGGCTGGAGCCCCGCCTGGGTCAGAC
GCCAGTGACAGAAGCTGTGAGTGGAAGACGAGGGATTGCCATCGCCTATGAGGATGAGGGAAGCGGCTGA

Translation (489 aa):
MESMFSSPAEAALQRETGVPGLLTPLPDLDGVYELERVAGFVRDLGCERVALQFPDQLLGDAVAVAARLE
ETTGSKMFILGDTAYGSCCVDVLGAEQAGAQALIHFGPACLSPPARPLPVAFVLRQRSVALELCVKAFEA
QNPDPKAPVVLLSEPACAHALEALATLLRPRYLDLLVSSPAFPQPVGSLSPEPMPLERFGRRFPLAPGRR
LEEYGAFYVGGSKASPDPDLDPDLSRLLLGWAPGQPFSSCCPDTGKTQDEGARAGRLRARRRYLVERARD
ARVVGLLAGTLGVAQHREALAHLRNLTQAAGKRSYVLALGRPTPAKLANFPEVDVFVLLACPLGALAPQL
SGSFFQPILAPCELEAACNPAWPPPGLAPHLTHYADLLPGSPFHVALPPPESELWETPDVSLITGDLRPP
PAWKSSNDHGSLALTPRPQLELAESSPAASFLSSRSWQGLEPRLGQTPVTEAVSGRRGIAIAYEDEGSG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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