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Report for CCDS5032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5032.1 Public Homo sapiens 6 MANEA 24 110 108 CCDS HistoryNCBI Gene:79694Re-query CCDS DB by CCDS ID:5032.1Re-query CCDS DB by GeneID:79694See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358812.9 ENSP00000351669.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358812.9Link to Ensembl Protein Viewer:ENSP00000351669.4Re-query CCDS DB by Nucleotide ID:ENST00000358812Re-query CCDS DB by Protein ID:ENSP00000351669
Original member Current member EBI ENST00000684753.1 ENSP00000506887.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684753.1Link to Ensembl Protein Viewer:ENSP00000506887.1Re-query CCDS DB by Nucleotide ID:ENST00000684753Re-query CCDS DB by Protein ID:ENSP00000506887
Original member Current member EBI ENST00000682663.1 ENSP00000507267.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682663.1Link to Ensembl Protein Viewer:ENSP00000507267.1Re-query CCDS DB by Nucleotide ID:ENST00000682663Re-query CCDS DB by Protein ID:ENSP00000507267
Original member Current member NCBI NM_024641.4 NP_078917.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024641.4Link to Protein Sequence:NP_078917.2Re-query CCDS DB by Nucleotide ID:NM_024641Re-query CCDS DB by Protein ID:NP_078917Link to BLAST:NP_078917.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078917.2 462 Q5SRI9 462 100% 0 0

Chromosomal Locations for CCDS 5032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 95586440 95586983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95596737 95596846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95604827 95604903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95605748 95606405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCAAAGTTTCGGAGAAGGACTTGCATCATTTTGGCACTTTTTATTCTATTTATTTTCTCTCTGATGA
TGGGTTTAAAAATGCTGAGACCAAATACAGCTACTTTTGGAGCTCCTTTTGGACTTGACCTTCTTCCAGA
ACTTCATCAACGAACTATTCATTTGGGGAAAAATTTTGATTTCCAAAAGAGTGACAGAATCAACAGTGAA
ACAAATACCAAGAATTTAAAAAGTGTTGAAATCACTATGAAACCTTCCAAAGCCTCTGAACTTAACTTGG
ATGAACTACCACCTCTGAACAATTATCTACATGTATTTTATTACAGTTGGTATGGAAATCCACAATTTGA
TGGTAAATATATACATTGGAATCATCCAGTGTTAGAGCATTGGGACCCTAGAATAGCCAAGAATTATCCA
CAAGGGAGACACAACCCTCCAGATGACATTGGCTCCAGCTTTTATCCTGAATTGGGAAGTTACAGTTCTC
GGGATCCTTCTGTCATAGAAACTCACATGAGACAAATGCGCTCAGCTTCAATTGGTGTACTAGCCCTCTC
TTGGTACCCACCTGATGTAAATGATGAAAATGGAGAACCTACTGATAACTTGGTACCCACTATTTTGGAT
AAAGCTCATAAATATAACCTAAAGGTTACTTTTCACATAGAACCATATAGCAATCGAGATGATCAAAACA
TGTACAAAAATGTCAAGTATATTATAGACAAATATGGAAATCATCCGGCCTTTTACAGGTACAAGACGAA
GACTGGCAATGCTCTTCCTATGTTTTATGTCTATGATTCCTATATTACCAAGCCTGAAAAATGGGCCAAT
CTGTTAACCACCTCAGGGTCTCGGAGTATTCGCAATTCTCCTTATGATGGACTGTTTATTGCCCTTCTGG
TAGAAGAAAAACATAAGTATGATATTCTTCAAAGTGGTTTTGATGGAATTTACACATATTTTGCCACAAA
TGGCTTTACTTATGGCTCATCACATCAGAATTGGGCTAGCCTAAAATTATTTTGTGATAAATACAACTTA
ATATTTATCCCAAGTGTGGGCCCAGGATACATAGATACCAGCATCCGTCCATGGAACACGCAAAACACTC
GGAACCGAATCAATGGGAAGTATTATGAAATTGGTCTGAGTGCCGCACTTCAGACACGCCCCAGCTTAAT
TTCTATCACCTCTTTTAATGAGTGGCATGAAGGAACTCAGATTGAAAAAGCTGTTCCCAAAAGAACCAGT
AATACAGTGTACCTAGATTACCGTCCTCATAAACCAGGTCTTTACCTAGAACTGACTCGCAAGTGGTCTG
AAAAATACAGTAAGGAAAGAGCAACTTATGCATTAGATCGCCAGCTGCCTGTTTCTTAA

Translation (462 aa):
MAKFRRRTCIILALFILFIFSLMMGLKMLRPNTATFGAPFGLDLLPELHQRTIHLGKNFDFQKSDRINSE
TNTKNLKSVEITMKPSKASELNLDELPPLNNYLHVFYYSWYGNPQFDGKYIHWNHPVLEHWDPRIAKNYP
QGRHNPPDDIGSSFYPELGSYSSRDPSVIETHMRQMRSASIGVLALSWYPPDVNDENGEPTDNLVPTILD
KAHKYNLKVTFHIEPYSNRDDQNMYKNVKYIIDKYGNHPAFYRYKTKTGNALPMFYVYDSYITKPEKWAN
LLTTSGSRSIRNSPYDGLFIALLVEEKHKYDILQSGFDGIYTYFATNGFTYGSSHQNWASLKLFCDKYNL
IFIPSVGPGYIDTSIRPWNTQNTRNRINGKYYEIGLSAALQTRPSLISITSFNEWHEGTQIEKAVPKRTS
NTVYLDYRPHKPGLYLELTRKWSEKYSKERATYALDRQLPVS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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