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Report for CCDS50283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50283.1 Public Mus musculus 18 Tmed7 23 108 98 CCDS HistoryNCBI Gene:66676Re-query CCDS DB by CCDS ID:50283.1Re-query CCDS DB by GeneID:66676See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151189.1 ENSMUSP00000120904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151189.1Link to Ensembl Protein Viewer:ENSMUSP00000120904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151189Re-query CCDS DB by Protein ID:ENSMUSP00000120904
Original member Current member NCBI NM_025698.1 NP_079974.1 Accepted alive Link to Nucleotide Sequence:NM_025698.1Link to Protein Sequence:NP_079974.1Re-query CCDS DB by Nucleotide ID:NM_025698Re-query CCDS DB by Protein ID:NP_079974Link to BLAST:NP_079974.1

Chromosomal Locations for CCDS 50283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46588452 46588688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46593249 46593494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46597091 46597282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCCGCGGCCGGGGTCGGCGCCGCGCTGGGCGGCCGCCGCGGGCCGTTGGGGTTGCAGGCTGCTTGCTC
TACTGCTGCTCCTGCCGGCTCCGAGCGGCGGCTCCGAGATCACCTTCGAGCTGCCCGATAATGCCAAGCA
GTGCTTCTACGAGGACATCACTCAGGGCACCAAGTGCACCCTGGAGTTCCAGGTGATTACTGGTGGTCAC
TACGATGTTGATTGTCGATTGGAAGATCCTGATGGTAAAGTGTTGTACAAGGAGATGAAGAAACAGTATG
ATAGTTTCACCTTCACAGCCTCCAGAAATGGGACGTACAAGTTTTGCTTCAGCAATGAGTTTTCTACTTT
CACACACAAAACAGTGTATTTCGATTTCCAAGTTGGAGAAGACCCACCTTTGTTTCCCAGTGAGAACCGA
GTCAGTGCCCTTACCCAGATGGAATCCGCCTGCGTTTCCATTCATGAAGCTCTCAAGTCCGTCATTGACT
ATCAGACACATTTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACAAGAGTGGC
CTATTGGTCGGTGGGGGAAGCCCTCATCCTTCTGGTGGTTAGCGTAGGGCAGGTGTTTCTTCTGAAGAGC
TTTTTCTCAGATAAAAGAACCACCACAACCCGCGTCGGATCCTAA

Translation (224 aa):
MPRPGSAPRWAAAAGRWGCRLLALLLLLPAPSGGSEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGH
YDVDCRLEDPDGKVLYKEMKKQYDSFTFTASRNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENR
VSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSVGQVFLLKS
FFSDKRTTTTRVGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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