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Report for CCDS50236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50236.1 Public Mus musculus 18 Dtna 23 108 98 CCDS HistoryNCBI Gene:13527Re-query CCDS DB by CCDS ID:50236.1Re-query CCDS DB by GeneID:13527See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115832.3 ENSMUSP00000111498.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115832.3Link to Ensembl Protein Viewer:ENSMUSP00000111498.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115832Re-query CCDS DB by Protein ID:ENSMUSP00000111498
Original member Current member NCBI NM_001285817.1 NP_001272746.1 Accepted alive Link to Nucleotide Sequence:NM_001285817.1Link to Protein Sequence:NP_001272746.1Re-query CCDS DB by Nucleotide ID:NM_001285817Re-query CCDS DB by Protein ID:NP_001272746Link to BLAST:NP_001272746.1
Original member Current member NCBI NM_001361215.1 NP_001348144.1 Accepted alive Link to Nucleotide Sequence:NM_001361215.1Link to Protein Sequence:NP_001348144.1Re-query CCDS DB by Nucleotide ID:NM_001361215Re-query CCDS DB by Protein ID:NP_001348144Link to BLAST:NP_001348144.1
Original member Current member NCBI NM_001361217.1 NP_001348146.1 Accepted alive Link to Nucleotide Sequence:NM_001361217.1Link to Protein Sequence:NP_001348146.1Re-query CCDS DB by Nucleotide ID:NM_001361217Re-query CCDS DB by Protein ID:NP_001348146Link to BLAST:NP_001348146.1
Original member Current member NCBI NM_207650.4 NP_997533.1 Accepted alive Link to Nucleotide Sequence:NM_207650.4Link to Protein Sequence:NP_997533.1Re-query CCDS DB by Nucleotide ID:NM_207650Re-query CCDS DB by Protein ID:NP_997533Link to BLAST:NP_997533.1

Chromosomal Locations for CCDS 50236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 23535163 23535229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23545686 23545766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23569562 23569775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23583084 23583169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23590189 23590343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23592972 23593077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23595459 23595625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23597434 23597558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23602591 23602674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23621387 23621474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23621967 23622064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23625082 23625195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23631332 23631428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23643147 23643306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23646197 23646286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23646888 23647053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23651516 23651648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 23653329 23653346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGATTGAAGATAGTGGAAAAAGAGGAAACACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGG
CTCAAGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTGAGATTTGTGCAGAAGAA
ATGCAATTTGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTG
GACCCAAACATAGAACTCAACGTGGCCCGCCTGGAGGCGGTGCTCTCCACTATTTTTTACCAGCTCAACA
AGAGGATGCCAACCACTCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACTTCCTGCTCGC
AGCCTTTGACCCGGAAGGCCATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGT
GGAGGAAAGATCATGGACAAGTTAAGATATATTTTCTCAATGATCTCTGACTCCAGTGGAGTGATGGTAT
ATGGAAGATATGACCAATTCCTTCGGGAAGTTCTCAAACTACCCACAGCAGTTTTTGAAGGTCCTTCATT
TGGTTACACAGAACAGTCAGCCAGATCCTGTTTCTCCCAACAGAAAAAGGTCACCTTAAATGGCTTCTTG
GACACGCTCATGTCAGACCCTCCTCCACAGTGCCTGGTATGGCTGCCTCTTCTGCACCGACTGGCAAATG
TAGAAAATGTCTTCCATCCAGTTGAGTGTTCCTACTGTCACAGTGAGAGCATGATGGGATTTCGATACCG
ATGTCAACAGTGTCACAACTACCAGCTTTGCCAGGACTGCTTCTGGAGGGGCCATGCAGGAGGTTCTCAT
AGCAACCAGCACCAAATGAAGGAGTATACGTCGTGGAAATCACCTGCTAAGAAGCTAACGAATGCATTAA
GCAAGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCCCAGACCAGCCTGAAAAGCC
ACTCAACTTGGCTCACATCGTGCCTCCGAGACCTGTAACCAGCATGAACGACACACTCTTTTCCCACTCT
GTTCCCTCCTCAGGAAGTCCTTTCATCACCAGGAGTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAAC
ACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCACACAGCAGAG
GAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCAGAGCTAGAG
AACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGAACATGAGCAAGCTTCCCAGCCCA
CGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTCAGACAGCGAAAGGATGA
GCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCATG
AAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCCGATCC
CCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGT
AGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACCTGCTGGTGGCT
GCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGTGAAACAG
AAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAA
GGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCAT
GGTGACATGGTCCCGGAAGATGGGGATCCTTACACGCAACCCGAGGATGGCAATTATGAGAACGAGTCTG
TGCGGCAGCTGGAGAATGAGCTGCAGCTGGAGGAGTACCTGAAGCAGAAGCTGCAGGACGAGGCCTACCA
GGTCAGCTTGCAAGGTTGA

Translation (682 aa):
MIEDSGKRGNTMAERRQLFAEMRAQDLDRIRLSTYRTACKLRFVQKKCNLHLVDIWNVIEALRENALNNL
DPNIELNVARLEAVLSTIFYQLNKRMPTTHQIHVEQSISLLLNFLLAAFDPEGHGKISVFAVKMALATLC
GGKIMDKLRYIFSMISDSSGVMVYGRYDQFLREVLKLPTAVFEGPSFGYTEQSARSCFSQQKKVTLNGFL
DTLMSDPPPQCLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSH
SNQHQMKEYTSWKSPAKKLTNALSKSLSCASSREPLHPMFPDQPEKPLNLAHIVPPRPVTSMNDTLFSHS
VPSSGSPFITRSMLESSNRLDEEHRLIARYAARLAAESSSSQPTQQRSAPDISFTIDANKQQRQLIAELE
NKNREILQEIQRLRVEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLM
KLLKTQGASSPRSSPSHTISRPIPMPIRSASACPTPTHTPQDSLTGVGGDVQEAFAQSSRRNLRSDLLVA
ADSITNTMSSLVKELNSEVASETESTVDSEFSRPQFEDLAPSPTSEKAFLAQIHSRKPGYIHGGAASTTH
GDMVPEDGDPYTQPEDGNYENESVRQLENELQLEEYLKQKLQDEAYQVSLQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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