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Report for CCDS50169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50169.1 Reviewed, update pending Mus musculus 17 Rab12 23 108 98 CCDS HistoryNCBI Gene:19328Re-query CCDS DB by CCDS ID:50169.1Re-query CCDS DB by GeneID:19328See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 50169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167962.1 ENSMUSP00000128645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167962.1Link to Ensembl Protein Viewer:ENSMUSP00000128645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167962Re-query CCDS DB by Protein ID:ENSMUSP00000128645
Original member NCBI NM_024448.2 NP_077768.2 Updated not alive Link to Nucleotide Sequence:NM_024448.2Link to Protein Sequence:NP_077768.2Re-query CCDS DB by Nucleotide ID:NM_024448Re-query CCDS DB by Protein ID:NP_077768
Current member NCBI NM_024448.3 NP_077768.3 Pending alive Link to Nucleotide Sequence:NM_024448.3Link to Protein Sequence:NP_077768.3Re-query CCDS DB by Nucleotide ID:NM_024448Re-query CCDS DB by Protein ID:NP_077768Link to BLAST:NP_077768.3

Chromosomal Locations for CCDS 50169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66495690 66495803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66497344 66497448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66498019 66498108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66500310 66500448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66506033 66506093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66519348 66519570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGATCCCAGCGCCGCGCTGCACCGGCGGCCCGCGGGCGGCAGCCTGGGCGCGGTCTCCCCGGCGCTGT
CGGGCGGCCAGGCCCGCCGGAGGAAGCAGCCCCCCAGGCCGGCCGACTTCAAGCTGCAGGTCATCATCAT
CGGCTCCCGCGGCGTGGGCAAGACCAGCCTGATGGAGCGCTTCACCGACGACACGTTCTGCGAGGCCTGC
AAGTCCACCGTGGGTGTTGACTTTAAAATCAAGACTGTAGAACTAAGAGGGAAGAAAATTAGATTACAGA
TCTGGGACACAGCAGGGCAGGAGCGATTTAACAGCATTACCTCAGCCTATTACAGAAGTGCCAAGGGGAT
CATACTCGTATATGACATCACCAAGAAGGAGACGTTCGATGACTTGCCAAAGTGGATGAAGATGATTGAC
AAGTATGCTTCAGAAGACGCCGAGCTCCTCCTGGTTGGAAATAAGCTGGACTGTGAGACAGACAGAGAAA
TCTCAAGGCAGCAAGGAGAAAAGTTTGCACAGCAGATAACCGGGATGCGCTTCTGCGAAGCCAGTGCCAA
GGACAATTTCAATGTGGACGAGATCTTTCTGAAACTTGTTGATGATATTCTGAAAAAGATGCCTCTTGAT
GTTTTGAGAAACGAGTTATCCAATAGCATCCTTTCTCTACAACCAGAGCCTGAGATCCCACCAGAGCTGC
CTCCTCCCAGACCACACGTCCGATGCTGTTGA

Translation (243 aa):
MDPSAALHRRPAGGSLGAVSPALSGGQARRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC
KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID
KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD
VLRNELSNSILSLQPEPEIPPELPPPRPHVRCC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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