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Report for CCDS50095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50095.1 Public Mus musculus 17 2310061I04Rik 23 108 98 CCDS HistoryNCBI Gene:69662Re-query CCDS DB by CCDS ID:50095.1Re-query CCDS DB by GeneID:69662See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148721.7 ENSMUSP00000116278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148721.7Link to Ensembl Protein Viewer:ENSMUSP00000116278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148721Re-query CCDS DB by Protein ID:ENSMUSP00000116278
Original member Current member NCBI NM_001033630.1 NP_001028802.1 Accepted alive Link to Nucleotide Sequence:NM_001033630.1Link to Protein Sequence:NP_001028802.1Re-query CCDS DB by Nucleotide ID:NM_001033630Re-query CCDS DB by Protein ID:NP_001028802Link to BLAST:NP_001028802.1

Chromosomal Locations for CCDS 50095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35892853 35892966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35893040 35893109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35894919 35895119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35895284 35895372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35895671 35896072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35897191 35897262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGTACCGTCCGAGCCCGGGGGCCGCCCGGCGCCTCGGGCCCTGCCTCCGCGCCTACCAGGCGCGACCCC
AGGACCAGCTCTCTCCTCGACCTCTACCATTCCCCCCGCTCTGGCCCCACTCCACTCCACCGACTTCTCC
ATCTTTTCCTCCTCACCGGTCACTACCACCCTCACATCCTCCTACCCACCATCTTCCCCAGGCTCCTCCA
CCACCTCTCTCTCAGGCCCAGGCTCTCAACTCATTGAGTATGGTTCTTCCTCCGAGAAAGAGGGAGAAGG
GACCAGGACCGGAACTACACAGTGGTTGCCTGGATGGGCTTAGGAGCCTTTTTGAGGGACCGCCTTGCCC
CTATCCTGGGGCTGTGATACCTTTCCAAGCCCCTGGACCTTCCCACTCTTCCCCCACCACTCCATCAGGA
GATGAGAGTATGGAGGAACACCTGGCTGTCATGCATGAGAGACTAAGACAAGAGCTTCCCACCCTCTTCC
TTCGCTCCCATGACTACACTATATATTCAATGGATGTGGAATTCATCAATGAGATCCTGAACATTCGTAC
CAAGGGCCGGACATTTTATGTTATGTCCCTGACCCTTTGCCGCTTCCTGGTTTGGAACTATTTTGCACAG
TTTCGGTTGGAGATTTTACAGCTGACCCGCCACCCTGAGAACTGGACCCTGCAAGCCCGCTGGCGTCTAA
TAGGTCTGCCCATACATATGCTCTTCCTGCGTTTCTACAGGCGTGATAAAGAGGATCTTTACCGGACCTT
CGATGCCTTTTCCACCTTCTACCTGAATTCCAGTGGCCTCATCTGTCGCCATCACCTGGACAAGCTGATG
CCTTCACACTCACCGTCGACGCCTGTGAAAAAGCTGCTGGTGGGAGCCCTGGTGGCCCTGGGGCTGTCAG
AACCAGAGCCCAGCTTACACCTGTGCTCCAAGGCCTGA

Translation (315 aa):
MYRPSPGAARRLGPCLRAYQARPQDQLSPRPLPFPPLWPHSTPPTSPSFPPHRSLPPSHPPTHHLPQAPP
PPLSQAQALNSLSMVLPPRKREKGPGPELHSGCLDGLRSLFEGPPCPYPGAVIPFQAPGPSHSSPTTPSG
DESMEEHLAVMHERLRQELPTLFLRSHDYTIYSMDVEFINEILNIRTKGRTFYVMSLTLCRFLVWNYFAQ
FRLEILQLTRHPENWTLQARWRLIGLPIHMLFLRFYRRDKEDLYRTFDAFSTFYLNSSGLICRHHLDKLM
PSHSPSTPVKKLLVGALVALGLSEPEPSLHLCSKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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