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Report for CCDS50013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50013.1 Public Mus musculus 17 Caskin1 23 108 98 CCDS HistoryNCBI Gene:268932Re-query CCDS DB by CCDS ID:50013.1Re-query CCDS DB by GeneID:268932See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024958.8 ENSMUSP00000024958.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024958.8Link to Ensembl Protein Viewer:ENSMUSP00000024958.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024958Re-query CCDS DB by Protein ID:ENSMUSP00000024958
Original member Current member NCBI NM_027937.2 NP_082213.2 Accepted alive Link to Nucleotide Sequence:NM_027937.2Link to Protein Sequence:NP_082213.2Re-query CCDS DB by Nucleotide ID:NM_027937Re-query CCDS DB by Protein ID:NP_082213Link to BLAST:NP_082213.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082213.2 1431 Q6P9K8-1 1431 100% 0 0

Chromosomal Locations for CCDS 50013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24488970 24489063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24495966 24496017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24496120 24496217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24496426 24496571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24496654 24496749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24496864 24496994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24498858 24498966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24499061 24499169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24499253 24499347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24499503 24499620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24500697 24500798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24500891 24500979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24501060 24501144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24501230 24501333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24502116 24502226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24502317 24502418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24503801 24503939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24504020 24506020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24506523 24506937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24507117 24507216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4296 nt):
ATGGGGAAGGAGCAGGAGCTGGTGCAGGCAGTGAAGGCGGAGGACGTGGGGACCGCGCAGAGGCTGCTGC
AGAGGCCGCGGCCGGGGAAGGCCAAGCTCCTGGGCTCTACCAAGAAGATCAATGTCAACTTCCAGGACCC
GGATGGCTTCTCAGCCCTGCACCATGCCGCCCTGAATGGCAACACAGAATTGATCTCTCTGCTGCTGGAG
GCTCAGGCTGCTGTAGACATCAAGGACAACAAAGGTATGCGGCCGTTGCACTACGCCGCCTGGCAGGGCC
GGAAGGAGCCCATGAAGCTGGTGCTGAAGGCAGGCTCAGCAGTAAATGTCCCATCCGACGAAGGCCACAT
ACCCCTGCATTTGGCTGCCCAGCATGGTCACTACGATGTGTCAGAGATGCTACTGCAGCATCAGTCCAAC
CCCTGTATGGTAGACAACTCTGGAAAGACACCTCTGGACCTGGCCTGTGAGTTCGGCCGCGTAGGGGTGG
TCCAGCTGCTGCTAAGTAGCAACATGTGTGCAGCCTTGCTGGAGCCCCGACCAGGGGACACCACCGACCC
CAACGGCACCAGCCCCCTGCACCTGGCAGCCAAGAATGGCCACATCGACATCATCAGGCTCCTTCTTCAG
GCCGGCATCGACATTAACCGCCAGACCAAGTCTGGCACAGCTCTTCATGAGGCCGCACTCTGTGGGAAAA
CAGAAGTGGTTCGGCTACTGTTGGATAGTGGGATCAATGCCCAGGTGAGGAACACCTACAGCCAGACAGC
ACTGGACATTGTACACCAATTTACAACGTCCCAGGCCAGCAAGGAGATCAAGCAACTGCTTCGAGAGGCC
TCAGCGGCTCTGCAGGTCCGGGCAACAAAGGATTACTGTAACAACTATGATCTGACCAGTCTCAATGTGA
AGGCTGGGGACATTATCACGGTACTTGAACAGCATCCAGATGGCCGGTGGAAAGGCTGTATTCATGACAA
CCGGACAGGCAATGACAGGGTGGGCTACTTCCCATCTTCCCTGGGGGAGGCTATTGTCAAGCGAGCAGGT
TCCCGGACAGGCAGTGAGCCAAGCCCACCCCAGGGAGGTGGCTCACTGGGTCCCTCTGCACCCCCGGAGG
AGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGAGCAATGTGGCCGGGGG
CAGGAGTACTGGGGGCCATGCCTTGCATGCAGGCTCTGAAGGAGTTAAGCTCCTGGCAACCGTGCTTTCC
CAGAAGTCAGTCTCTGAGTCCAGCCCAGGAGATAGCCCGGTCAAGCCTCCAGAGGGCTCTTCAGGTGCGG
CCCGGTCCCAGCCTCCAGCAGCCCATGCTGGGCAGGTATATGGGGAGCAGCCACCGAAGAAGCTGGAATC
GGCCTCAGCCTCGGCCTCTGAGGGCAAGAGTGCTGAGGCGGTCAGTCAGTGGCTTGCCACATTCCAGCTA
CAGCTCTATGCCCCCAACTTCACCAGTGCTGGCTATGACCTGCCCACCATCAGTCGTATGACCCCTGAGG
ACCTCACAGCCATTGGCGTTACCAAGCCAGGCCACCGTAAGAAGATTACGGCAGAGATCAGCGGCCTGAA
CATCCCTGACTGGCTGCCTGAACACAAACCCGCTAACCTGGCTGTGTGGCTGTCAATGATTGGTCTGGCC
CAGTATTACAAGGTGCTGGTGGACAACGGCTATGAGAACATTGATTTCATCACCGATATCACCTGGGAGG
ACCTGCAGGAGATCGGTATCACCAAGCTGGGACACCAAAAGAAGCTGATGCTGGCAGTGAGGAAACTGGC
AGAGCTGCAAAAGGCAGAATACTCCAAGTATGAGGGGGGACCCCTGCGCCGAAAGACACCCCAATCACTT
GAAATGATGGCTATTGAGTCACCGCCCCCATCTGAGCCTGCTGCAGCAGAGTGCCAGTCTCCCAAGATGA
CCACCTTCCAGGACAGTGAACTCAGTGGAGAGCTGCAAGCTGCCCTGTCTGGCCCAGCTGAAGCAGGTGC
AGCTGCTGTTGAGAAATCCTCCAACCACCTGCCACCCACTCCGAGGACAACCTCTCGGGAGTCCAGCCTG
AGTGGACGGGCTCGGCACATAAGCAGCTCTCAGGAGCTGTTGGGCGATGGGCCTCCAGGGCCTGGCAGTC
CTATGTCACGAAGTCAGGAATACCTGCTGGATGAGGGGATGGCTCCTGGCACCCCACCCAAGGAGGTGCG
GTCCAGCCGCCATGGCCACAGCGTCAAGAGGGCCAGTGTGCCCCCGGTGCCCGGCAAGCCACGACAGGTC
CTTCCGTCTGGTGCCAGCCACTTCACACCCCCACAGACGCCCACCAAAGCTCAGCCAGGCTCCCCTCAGG
CCCTTGGGGGACCTCATGGTCCAGCCACAGCCAAGGTGAAGCCCACCCCACAGCTGCTACCACCAACAGA
CCGGCCCATGTCACCCCGTTCCTTGCCTCAGTCACCCACACACCGTGGCTTTGCCTATGTGCTGCCTCAG
CCAGTTGAGGGCGAGGTAGGGCCACCTGCTCCCGGACCTGCGCCCCCACCAGTACCCGCAGCTGTACCTA
CTCTATGCTTGCCCCCAGAAACTGATGTAGAGCCTGGGAGGCCCAAGAAACGTGCCCACAGCTTGAATCG
CTATGCAGCATCCGACAGTGAGCCTGAGAGGGATGAGCTGCTGGTGCCGGCTGCCGCTGGACCCTATGCC
ACAGTCCAGAGGCGTGTGGGTCGGAGCCATTCAGTGAGGGCTCCTGCTGGCACGGACAAGAATGTTAACC
GCAGTCAGTCCTTTGCTGTGCGGCCACGTAAGAAGGGGCCCCCACCACCTCCACCCAAACGCTCCAGCTC
GGCCATGGCCAGTGCCAACCTAGCCGACGAGCCGGCTCCAGACGTTGAGGCAGAGGACGGCCGGCTAGGG
GTCCGGGCGCAACGCCGTCGGGCTAGTGATCTCGCCGGCAGTGTGGACACAGGTAGTGCTGGCAGTGTGA
AGAGCATCGCAGCCATGTTGGAGCTGTCTTCCATTGGGGGTGGAGGGCGGGCTATTCGCAGGCCCCCCGA
AGGCCACCCCACACCCCGTCCCGCCAGTCCAGAACCGGGCCGAGTAGCTACCGTGTTGGCCTCTGTGAAG
CACAAAGAGGCCATTGGGCCTGACGGTGAAGTGGTGAACCGGCGCCGTACACTCAGTGGCCCAGTCACTG
GGCTTTTGGCCACTGCTCGCCGGGGGTCTGGGGAACCTGCAGAGCAGAGTCATTTTATGGAGGATGGCAC
AGCCCGACAACGGCTTCGAGGTCCAGCTAAGGGTGAGGCAAGTGCGGAGGGTCCTCCCCTTGCCCGGGTA
GAGGCCAGTGCCACGCTCAAGAGGCGCATCCGGGCCAAGCAGAGCCAACAAGAGAACGTCAAATTCATCC
TGACAGAGTCTGACACAGTGAAGCGCAGGCCTAAGGCTAAGGAGCCTGACACTGGCCCTGAGCCACCCCC
ACCACTGTCTGTGTATCAGAATGGCACAGCCACCGTTCGCCGAAGGCCAACCTCAGAGCAGGCTGGGCCT
CCAGAGCTGCCCCCTCCTCCCCCTCCTGCTGAGCCCCCACCCGCTGACCTGATGCAGCTGCCTCCACTGC
CCCTGCCTGATGGCAATGCACGGAAGCCTGTGAAGCCACCCGTCTCTCCCAAGCCCATTCTGTCTCAGCC
TGTGTCCAAGATCCAGGGCTCACCTACACCTGCCTCCAAGAAGGTGCCACTGCCAGGCCCTGGCAGCCCA
GAGGTAAAGCGTGCTCATGGCACGCCACCGCCCGTGTCACCCAAGCCGCCTCCGCCACCTACAGCACCCA
AGCCAGCCAAGGCTTTGGCGGGACTACAGTCCAGCAGCGCCACCCCCTCGCCTGTGCCCTCTCCAGCGCG
TCAGCCGCCAGCAGCGCTCATCAAGCCAGCTAGTTCGCCGCCCTCGCAGAGCGCCAGCCCTGTCAAGCCC
CCTTCCCCAGGGACACCCGCGCTGCACGTACCCGCCAAGCCCCCTCGCGCTGCTGCTTCAGTGGTCTCCG
GACCCCCAGTAGCTTCAGATTGTGCTTCACCCGGGGACAGCGCTCGGCAGAAGCTGGAAGAGACTAGCGC
GTGTTTGGCTGCAGCACTGCAGGCAGTGGAGGAGAAGATAAGGCAGGAAGATGGACAAGGCCCTCGCCCC
TCCTCCATCGAGGAGAAGAGCACTGGCAGCATCCTGGAAGACATCGGCAGCATGTTCGACGACCTGGCCG
ACCAGCTGGACGCCATGCTGGAGTGA

Translation (1431 aa):
MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGFSALHHAALNGNTELISLLLE
AQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHYDVSEMLLQHQSN
PCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQ
AGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREA
SAALQVRATKDYCNNYDLTSLNVKAGDIITVLEQHPDGRWKGCIHDNRTGNDRVGYFPSSLGEAIVKRAG
SRTGSEPSPPQGGGSLGPSAPPEEIWVLRKPFAGGDRSGSLSNVAGGRSTGGHALHAGSEGVKLLATVLS
QKSVSESSPGDSPVKPPEGSSGAARSQPPAAHAGQVYGEQPPKKLESASASASEGKSAEAVSQWLATFQL
QLYAPNFTSAGYDLPTISRMTPEDLTAIGVTKPGHRKKITAEISGLNIPDWLPEHKPANLAVWLSMIGLA
QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYSKYEGGPLRRKTPQSL
EMMAIESPPPSEPAAAECQSPKMTTFQDSELSGELQAALSGPAEAGAAAVEKSSNHLPPTPRTTSRESSL
SGRARHISSSQELLGDGPPGPGSPMSRSQEYLLDEGMAPGTPPKEVRSSRHGHSVKRASVPPVPGKPRQV
LPSGASHFTPPQTPTKAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPMSPRSLPQSPTHRGFAYVLPQ
PVEGEVGPPAPGPAPPPVPAAVPTLCLPPETDVEPGRPKKRAHSLNRYAASDSEPERDELLVPAAAGPYA
TVQRRVGRSHSVRAPAGTDKNVNRSQSFAVRPRKKGPPPPPPKRSSSAMASANLADEPAPDVEAEDGRLG
VRAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAIRRPPEGHPTPRPASPEPGRVATVLASVK
HKEAIGPDGEVVNRRRTLSGPVTGLLATARRGSGEPAEQSHFMEDGTARQRLRGPAKGEASAEGPPLARV
EASATLKRRIRAKQSQQENVKFILTESDTVKRRPKAKEPDTGPEPPPPLSVYQNGTATVRRRPTSEQAGP
PELPPPPPPAEPPPADLMQLPPLPLPDGNARKPVKPPVSPKPILSQPVSKIQGSPTPASKKVPLPGPGSP
EVKRAHGTPPPVSPKPPPPPTAPKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPVKP
PSPGTPALHVPAKPPRAAASVVSGPPVASDCASPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRP
SSIEEKSTGSILEDIGSMFDDLADQLDAMLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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