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Report for CCDS50012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50012.1 Public Mus musculus 17 Tbc1d24 23 108 98 CCDS HistoryNCBI Gene:224617Re-query CCDS DB by CCDS ID:50012.1Re-query CCDS DB by GeneID:224617See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097376.9 ENSMUSP00000094989.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097376.9Link to Ensembl Protein Viewer:ENSMUSP00000094989.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097376Re-query CCDS DB by Protein ID:ENSMUSP00000094989
Original member Current member EBI ENSMUST00000167791.8 ENSMUSP00000127005.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167791.8Link to Ensembl Protein Viewer:ENSMUSP00000127005.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167791Re-query CCDS DB by Protein ID:ENSMUSP00000127005
Original member Current member EBI ENSMUST00000201805.3 ENSMUSP00000143883.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201805.3Link to Ensembl Protein Viewer:ENSMUSP00000143883.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201805Re-query CCDS DB by Protein ID:ENSMUSP00000143883
Original member Current member EBI ENSMUST00000201301.3 ENSMUSP00000143949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201301.3Link to Ensembl Protein Viewer:ENSMUSP00000143949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201301Re-query CCDS DB by Protein ID:ENSMUSP00000143949
Original member Current member NCBI NM_001163847.1 NP_001157319.1 Accepted alive Link to Nucleotide Sequence:NM_001163847.1Link to Protein Sequence:NP_001157319.1Re-query CCDS DB by Nucleotide ID:NM_001163847Re-query CCDS DB by Protein ID:NP_001157319Link to BLAST:NP_001157319.1
Original member Current member NCBI NM_001163848.1 NP_001157320.1 Accepted alive Link to Nucleotide Sequence:NM_001163848.1Link to Protein Sequence:NP_001157320.1Re-query CCDS DB by Nucleotide ID:NM_001163848Re-query CCDS DB by Protein ID:NP_001157320Link to BLAST:NP_001157320.1
Original member Current member NCBI NM_001163849.1 NP_001157321.1 Accepted alive Link to Nucleotide Sequence:NM_001163849.1Link to Protein Sequence:NP_001157321.1Re-query CCDS DB by Nucleotide ID:NM_001163849Re-query CCDS DB by Protein ID:NP_001157321Link to BLAST:NP_001157321.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157319.1 561 Q3UUG6-1 561 100% 0 0
NP_001157320.1 561 Q3UUG6-1 561 100% 0 0
NP_001157321.1 561 Q3UUG6-1 561 100% 0 0

Chromosomal Locations for CCDS 50012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24181241 24181395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24181756 24181984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24182450 24182545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24182786 24182849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24183694 24183852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24184381 24184398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24185204 24186168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGACCCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAGATGGATGCATCCATCCAGGACCTGGGGC
CAAAGGAGCTGAACTGCACGGAGCTACAGGAGCTGAAGCAACTGGCACGGCAGGGTTACTGGGCTCAGAG
CCACACCCTGCGCGGGAAAGTGTACCAGCGCCTGATCCGGGACATCCCCTGCCGCACAGTCACACCTGAT
GCCAGCGTGTACAGTGACATTGTGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGTCTGCCCTTGCCTG
AGTTTGTAGACAACACTCAGGTGCCCACCTACTGCCTGAACACACGGGGTGAAGGGGCTGTGCGCAAGAT
CCTCCTGTGTATTGCCAACCAGTTCCCTGACATCTCCTTCTGCCCTGCCCTGCCTGCTGTGGTGGCCTTG
CTACTGCACTACAGCATCGATGAAGCTGAGTGTTTCGAAAAAGCCTGCCGCATCTTATCCTGCAATGACC
CCACCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTTGAGTCTTCCTGTATGACATTTGGGGACCTGGT
GAACAAGTACTGCCAGGCAGCCCATAAACTGATGGTGGCCGTGTCAGAGGACGTCCTGCAGGTCTACTCT
GACTGGCAGCGATGGCTCTTTGGGGAGCTGCCCCTCAATTACTTTGCCCGTGTTTTTGATGTCTTCCTTG
TAGAAGGCTACAAAGTATTGTACCGAGTTGCTCTGGCCATCCTCAAGTTCTTCCACAAGGTGAGAGCAGG
ACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGAATGTTTGTCAAGGACATTGCCAAGACAGTG
TCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCATCCGCCTATTTTCCCGAAAGGAGATCCAGCTCTTGC
AAATGGCCAATGAGAAAGCACTGAGGCAGAAGGGTATAACTGTCAAACAGAAGAGTGTCTCACTTTCTAA
AAGGCAGTTTGTGCACTTAGCTGTCCATGCAGAGAACTTCCACTCAGAGATTGTCAGCGTGAAGGAGATG
AGAGACATTTGGTCCTGGATCCCTGAGCGCTTTGCCCTCTGCCAACCCCTCCTGCTCTTCTCATCACTGC
AGCATGGGTACAGCCTAAGCAGGTTCTATTTCCAGTGTGAAGGACATGAGCCCACCCTCCTGCTCATCAA
GACCACTCAAAAGGAGGTCTGTGGGGCTTACCTGTCAACAGACTGGAGCGAGAGGACTAAATTCGGAGGC
AAGCTGGGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGGCTGCAGCCGGAAGTGCAGCGCTATGAGT
GGGTGGTCATCAAACACCCAGAGCTGACCAAGGCAACATCCCTCAAGTCTTCAGAGGCTGCAGGCAGTTC
TTCCCTCATCAGCCACTGCTCTTCAGACCCCGCTGATCGGCTCTCCCCTTTCCTGGCTGCCCGGCACTTC
AACCTGCCCTCCAAGACTGAGTCCATGTTCATGGCTGGAGGCAATGACTGCCTCATCATTGGGGGAGGAG
GTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGGCGCACTGGACACTGTGACACATTCAACAA
CCAGCCCCTCTGCTCTGAGAACTTCCTCATCGCAGCTGTGGAGGCTTGGGGCTTCCAAGACCCTGACACC
GAATGA

Translation (561 aa):
MDPPGYNCFVDKDKMDASIQDLGPKELNCTELQELKQLARQGYWAQSHTLRGKVYQRLIRDIPCRTVTPD
ASVYSDIVGKIVGKHSSSSLPLPEFVDNTQVPTYCLNTRGEGAVRKILLCIANQFPDISFCPALPAVVAL
LLHYSIDEAECFEKACRILSCNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYS
DWQRWLFGELPLNYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLESDNVKQDIRMFVKDIAKTV
SPEKLLEKAFAIRLFSRKEIQLLQMANEKALRQKGITVKQKSVSLSKRQFVHLAVHAENFHSEIVSVKEM
RDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERTKFGG
KLGFFGTGECFVFRLQPEVQRYEWVVIKHPELTKATSLKSSEAAGSSSLISHCSSDPADRLSPFLAARHF
NLPSKTESMFMAGGNDCLIIGGGGGQALYVDGDLNRGRTGHCDTFNNQPLCSENFLIAAVEAWGFQDPDT
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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