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Report for CCDS50000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50000.1 Public Mus musculus 17 Zfp944 23 108 98 CCDS HistoryNCBI Gene:319615Re-query CCDS DB by CCDS ID:50000.1Re-query CCDS DB by GeneID:319615See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115535.2 ENSMUSP00000111197.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115535.2Link to Ensembl Protein Viewer:ENSMUSP00000111197.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115535Re-query CCDS DB by Protein ID:ENSMUSP00000111197
Original member Current member NCBI NM_001355280.1 NP_001342209.1 Accepted alive Link to Nucleotide Sequence:NM_001355280.1Link to Protein Sequence:NP_001342209.1Re-query CCDS DB by Nucleotide ID:NM_001355280Re-query CCDS DB by Protein ID:NP_001342209Link to BLAST:NP_001342209.1
Original member Current member NCBI NM_176962.4 NP_795936.2 Accepted alive Link to Nucleotide Sequence:NM_176962.4Link to Protein Sequence:NP_795936.2Re-query CCDS DB by Nucleotide ID:NM_176962Re-query CCDS DB by Protein ID:NP_795936Link to BLAST:NP_795936.2

Chromosomal Locations for CCDS 50000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 22338786 22340107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22340967 22341093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 22343640 22343669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGATGTTTCCCTGGTAAATGCTCCCCAGGGTCAGTTAACATTCAAGGACGTGGCTGTGGACTTCTCAC
AGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATGGATGTTATGTTGGAGAATTACAA
CAATCTGTTTTTTGTGGAGAATCATTGTGTGTGTCCTAAATATGAGAATGTCTTGGATCAAGACACACAG
CATATTTTCCACAAGCATGTAAATATCCAAAAGAAGTCTTGTAAATGTAATGATCGTGGCAAAGATATTT
ATGAATACACCCAAAGTGTACTTTACCAAGATAACTTCAGGGATACACATGTTAAGTCATCAGATGTAAA
CAGACATGAAACTGGAAACACCAGAGAACCTTGCAAATATAAAAACTGTGTAAACTGTTTAAATTTGTGT
TCTATCATTGGTCTAAATCAAGGAATCCACATAGGAAAGAAAGAACACAATGGGACAGTGCTTGATAAGG
TTTTTGACTCTAAACAAATACTCGGGCTGAAACAAACCAATAGTGGAAAGAAACCTTACAGATGTAGTGA
ATGTTCCAGATGCTTCACCAAGAAATGCAAGCTTAGACAACATCAGATAATTCATACAGGAGAGAAACCT
TACAGATGTAGTCAATGTGACAAATGCTTTTCCCAAAAATGCAGTCATAGTACTCATAAGAAAATTCATA
CAGGAGAGAAACCTTACAAATGTACTGAATGTGACAAATGCTTTACCTTTAAAACTGACCTAAGAATTCA
TCAGAGAATTCATACAGGAGAGAAACCATACAAATGTATCGAATGTGACAAATCTTTTACCCAGAAAGGC
CATCTTATAATTCATCAGAGAATTCATACAGGAGAGAAGCCTTATAAATGCAGTGAATGTGACAAATGCT
TTACCCAAAAATGTAGTCTTACTATTCATCAGAGAATTCATACAGGGGAAAAACCGTATAAATGTGGCAA
ATGTGAAAAATGCTTCACTCACAAAGGTGATCTTAGAAGTCATCAGAGAATTCATACAGGAGAGAAACCT
TATAAATGTAGTGAATGTGACAAATGCTTTACCCACAAACGCAGTCTTAGAAGTCATCAAAGAATTCATA
CAGGAGAGAAGCCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCACAAACGCAGTCTTAGTATTCA
TCAAATAATTCATACAGAAGAGAAGCCTTATAGATGTAGTGGATGTGACAAAATCTTTAATCACAAAGGT
GATCTTAGAAATCATCAGAGAATTCATACAGGACAGAAACCTTATAAATGTAGTGAATGTGACAAGTGCT
TTGTTCATAAATACAGTCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTATAAATGTAATGA
ATGTAATGAATTCTTTAGATATAAATGTAGTCTTAGGACTCATCAGAAAATGCACACATTAGAGCATATT
TACAAATGA

Translation (492 aa):
MDVSLVNAPQGQLTFKDVAVDFSQEEWECLDCAQRALYMDVMLENYNNLFFVENHCVCPKYENVLDQDTQ
HIFHKHVNIQKKSCKCNDRGKDIYEYTQSVLYQDNFRDTHVKSSDVNRHETGNTREPCKYKNCVNCLNLC
SIIGLNQGIHIGKKEHNGTVLDKVFDSKQILGLKQTNSGKKPYRCSECSRCFTKKCKLRQHQIIHTGEKP
YRCSQCDKCFSQKCSHSTHKKIHTGEKPYKCTECDKCFTFKTDLRIHQRIHTGEKPYKCIECDKSFTQKG
HLIIHQRIHTGEKPYKCSECDKCFTQKCSLTIHQRIHTGEKPYKCGKCEKCFTHKGDLRSHQRIHTGEKP
YKCSECDKCFTHKRSLRSHQRIHTGEKPYKCSECDKCFTHKRSLSIHQIIHTEEKPYRCSGCDKIFNHKG
DLRNHQRIHTGQKPYKCSECDKCFVHKYSLSIHQRIHTGEKPYKCNECNEFFRYKCSLRTHQKMHTLEHI
YK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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