NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5.1 Public Homo sapiens 1 HES4 24 110 108 CCDS HistoryNCBI Gene:57801Re-query CCDS DB by CCDS ID:5.1Re-query CCDS DB by GeneID:57801See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304952.11 ENSP00000304595.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304952.11Link to Ensembl Protein Viewer:ENSP00000304595.7Re-query CCDS DB by Nucleotide ID:ENST00000304952Re-query CCDS DB by Protein ID:ENSP00000304595
Original member Current member NCBI NM_021170.4 NP_066993.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021170.4Link to Protein Sequence:NP_066993.1Re-query CCDS DB by Nucleotide ID:NM_021170Re-query CCDS DB by Protein ID:NP_066993Link to BLAST:NP_066993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066993.1 221 Q9HCC6 221 100% 0 0

Chromosomal Locations for CCDS 5.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 999059 999432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 999526 999613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 999692 999787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 999866 999973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCCGCAGACACGCCGGGGAAACCGAGCGCCTCGCCGATGGCAGGAGCGCCGGCCAGCGCCAGCCGGA
CCCCAGACAAGCCCCGGAGCGCGGCCGAGCACCGCAAGTCCTCCAAGCCGGTCATGGAGAAGCGGCGCCG
AGCGCGTATTAACGAGAGCCTCGCTCAGCTCAAAACCCTCATCCTGGACGCCCTCAGAAAAGAGAGCTCC
CGCCACTCGAAGCTGGAGAAGGCGGACATCCTGGAGATGACCGTGAGACACCTGCGGAGCCTGCGTCGCG
TGCAGGTGACGGCCGCGCTCAGCGCCGACCCCGCCGTTCTGGGCAAGTACCGCGCCGGCTTCCACGAGTG
TCTGGCGGAGGTGAACCGCTTCCTGGCCGGCTGCGAGGGCGTCCCGGCCGACGTGCGCTCCCGCCTGCTG
GGCCACCTGGCAGCCTGCCTGCGCCAGCTGGGACCCTCCCGCCGCCCGGCCTCGCTGTCCCCGGCTGCCC
CCGCAGAGGCCCCAGCGCCCGAGGTCTACGCGGGCCGCCCGCTGCTGCCATCGCTCGGCGGCCCCTTCCC
TCTGCTCGCGCCGCCGCTGCTGCCGGGTCTGACCCGGGCGCTGCCCGCCGCCCCCAGGGCGGGGCCGCAG
GGCCCGGGTGGGCCCTGGAGGCCGTGGCTGCGCTGA

Translation (221 aa):
MAADTPGKPSASPMAGAPASASRTPDKPRSAAEHRKSSKPVMEKRRRARINESLAQLKTLILDALRKESS
RHSKLEKADILEMTVRHLRSLRRVQVTAALSADPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLL
GHLAACLRQLGPSRRPASLSPAAPAEAPAPEVYAGRPLLPSLGGPFPLLAPPLLPGLTRALPAAPRAGPQ
GPGGPWRPWLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH