NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49740.1 Public Mus musculus 15 Itgb7 23 108 98 CCDS HistoryNCBI Gene:16421Re-query CCDS DB by CCDS ID:49740.1Re-query CCDS DB by GeneID:16421See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001327.10 ENSMUSP00000001327.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001327.10Link to Ensembl Protein Viewer:ENSMUSP00000001327.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000001327Re-query CCDS DB by Protein ID:ENSMUSP00000001327
Original member Current member NCBI NM_013566.2 NP_038594.2 Accepted alive Link to Nucleotide Sequence:NM_013566.2Link to Protein Sequence:NP_038594.2Re-query CCDS DB by Nucleotide ID:NM_013566Re-query CCDS DB by Protein ID:NP_038594Link to BLAST:NP_038594.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038594.2 806 P26011 806 100% 0 0

Chromosomal Locations for CCDS 49740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102216160 102216267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102216472 102216632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102216892 102217097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102217247 102217466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102217774 102217997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102218497 102218690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102219174 102219320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102222089 102222178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102222342 102222437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102222641 102222799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102223331 102223572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102224302 102224472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102224558 102224759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102227398 102227598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGGTGGATTCATCAACTGTTCTCATTTTTCTGCTGGTTCTGGGCGGAGGTCAGAGTGAGTTAGATACCA
AGATTACATCCTCTGGGGAGGCCGCAGAATGGGAGGATCCTGACCTGTCTCTGCAGGGATCCTGCCAGCC
AGTTCCTTCCTGCCAGAAGTGTATTCTCTCACATCCCAGCTGTGCATGGTGCAAACAACTGAACTTCACT
GCCTCGGGAGAGGCAGAGGCGAGGCGCTGCGCGCGGCGAGAGGAGCTACTGGCTCGCGGGTGCCCCGCGC
AGGAGCTAGAGGAGCCGAGAGGCCGCCAGGAGGTGCTGCAGGACAAGCCGCTCAGCCAGGGAGATCGCGG
CGAGGGGGCCACCCAGCTGGCCCCGCAGCGGATCCGCGTCACGCTGCGACCAGGGGAGCCCCAGAAATTC
CGGGTCCGCTTCCTCCGAGCTGCGGGGTACCCCGTGGACCTATATTACCTTATGGACCTGAGCTACTCAA
TGAAGGACGACTTGGAACGTGTGCGCCAGCTAGGGCATGCCCTGCTGGTCAGGCTGCAGGAGGTCACACA
TTCTGTGCGCATAGGTTTTGGCTCCTTCGTGGACAAAACGGTGCTGCCCTTTGTAAGCACCGTGCCCTCC
AAGCTTCACCACCCATGCCCCAGCCGACTGGAGCGTTGTCAGCCACCCTTCAGCTTTCACCACGTGCTGT
CCCTCACCGGGGACGCTCAAGCCTTCGAGAGAGAGGTGGGACGCCAGAATGTCTCTGGCAACCTGGACTC
ACCCGAAGGCGGCTTTGATGCCATTTTGCAGGCTGCCCTCTGCCAGGAACAGATTGGCTGGAGAAATGTC
TCCCGTCTTCTAGTGTTCACTTCAGACGATACATTCCACACAGCTGGGGATGGGAAACTGGGTGGCATTT
TCATGCCCAGCGACGGGCGGTGCCATCTGGACAGCAATGGTGTCTACACGAACAGCGCAGAGTTTGACTA
TCCCTCTGTGGGTCAAGTAGCCCAGGCCCTCACTGCAGCGAATATCCAACCTATCTTTGCTGTCACCGGT
GCAACACTGCCTGTGTATCAGGAGCTGAGACAGTTGATTCCCAAGTCTGCTGTCGGGGAGCTGAGTGAGG
ACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTATGATAGCCTGTCATCCACTGTGACTCTTGAGCA
CTCTCCACTCCCACCAGGAGTCAGCATCTCCTTTGAATCTCACTGTAAGGGTCCTGAGAAGACGGAGGGT
GAGGCTGGGGACCGGGGACAGTGCAATGATGTCCGAGTCAACCAGACGGTGGATTTCTGGGTCACTCTTC
AAGCTACTCACTGCCTCCCAGAAGCCCACGTCCTACGACTCTGGGCTCTTGGCTTCTCAGAGGAGTTAAC
TGTGGAGCTGCACACAGTGTGCGACTGTAACTGTGGTGATGCCCAGCCTCACGCTCCCTACTGCAGTGAT
GGACAGGGGGACCTTCAGTGCGGGATATGCAGCTGTGCCCCTGGCCGTCTTGGTCAGCTGTGTGAATGCT
CTGAGGCTGACCTGTCCTCCCCAGATTTGGAATCTGGTTGCCGGGCCCCAAACGGGACAGGGCCCCTATG
CAGCGGGAAGGGTCGATGCCAATGTGGACGCTGCAGCTGCAGTGGGCAGAGCTCTGGGCGTCTGTGCGAG
TGTGATGATGCCAGCTGTGAGCGACATGAGGGCATCCTCTGTGGAGGCTTTGGCCACTGCCAGTGTGGAG
TATGTCACTGTCACGCCAACCACACCGGCAGAGCTTGCGAGTGCAGCAAGAGTGTAGACAGCTGTGTCAG
TCCTGAAGGAGGGCTCTGCAGTGGGCACGGATACTGCAAATGCAACCGTTGCCAGTGCCTGGATGGCTAC
TACGGGGCTCTGTGTGACCAGTGCCTAGGCTGCAAGTCACCATGTGAGCAGTACAGGGATTGTGCAGAGT
GCGGGGCATTTGGTACCGGTCCCCTGGCAGCCAACTGTAGTGTGGTCTGTGCTGACGTGAATGTGACCTT
GACCTTGGCCCCTAACTTGGATGATGGCTGGTGCAAAGAAAGGACAATAGACAACCAGCTGTTCTTCTTC
CTGGTGGAGCATGCAGCCAGCGGGATCGTACTGAGAGTGAGACCCCAAGAGAAGGGAGTGGATCACACCC
GTGCCATCATACTGGGCTGCACAGGGGGCATCGTGGCAGTGGGACTAGGGCTGGTTCTGGCTTACCGGCT
CTCTGTGGAAATCTACGACCGACGGGAGTACAGGCGCTTTGAGAAGGAGCAGCAGCAACTCAACTGGAAG
CAGGACAACAATCCTCTCTACAAAAGTGCGATCACAACCACTGTCAACCCCCGCTTCCAAGGGACAAACG
GTCGGTCGCCATCCCTCTCTCTGACCAGGGAAGCAGACTGA

Translation (806 aa):
MVDSSTVLIFLLVLGGGQSELDTKITSSGEAAEWEDPDLSLQGSCQPVPSCQKCILSHPSCAWCKQLNFT
ASGEAEARRCARREELLARGCPAQELEEPRGRQEVLQDKPLSQGDRGEGATQLAPQRIRVTLRPGEPQKF
RVRFLRAAGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPS
KLHHPCPSRLERCQPPFSFHHVLSLTGDAQAFEREVGRQNVSGNLDSPEGGFDAILQAALCQEQIGWRNV
SRLLVFTSDDTFHTAGDGKLGGIFMPSDGRCHLDSNGVYTNSAEFDYPSVGQVAQALTAANIQPIFAVTG
ATLPVYQELRQLIPKSAVGELSEDSSNVVQLIMDAYDSLSSTVTLEHSPLPPGVSISFESHCKGPEKTEG
EAGDRGQCNDVRVNQTVDFWVTLQATHCLPEAHVLRLWALGFSEELTVELHTVCDCNCGDAQPHAPYCSD
GQGDLQCGICSCAPGRLGQLCECSEADLSSPDLESGCRAPNGTGPLCSGKGRCQCGRCSCSGQSSGRLCE
CDDASCERHEGILCGGFGHCQCGVCHCHANHTGRACECSKSVDSCVSPEGGLCSGHGYCKCNRCQCLDGY
YGALCDQCLGCKSPCEQYRDCAECGAFGTGPLAANCSVVCADVNVTLTLAPNLDDGWCKERTIDNQLFFF
LVEHAASGIVLRVRPQEKGVDHTRAIILGCTGGIVAVGLGLVLAYRLSVEIYDRREYRRFEKEQQQLNWK
QDNNPLYKSAITTTVNPRFQGTNGRSPSLSLTREAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH