NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49673.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49673.2 Public Mus musculus 15 Sgsm3 23 108 98 CCDS HistoryNCBI Gene:105835Re-query CCDS DB by CCDS ID:49673.2Re-query CCDS DB by GeneID:105835See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49673.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000139517.8 ENSMUSP00000122543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000139517.8Link to Ensembl Protein Viewer:ENSMUSP00000122543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000139517Re-query CCDS DB by Protein ID:ENSMUSP00000122543
Original member Current member NCBI NM_134091.2 NP_598852.3 Accepted alive Link to Nucleotide Sequence:NM_134091.2Link to Protein Sequence:NP_598852.3Re-query CCDS DB by Nucleotide ID:NM_134091Re-query CCDS DB by Protein ID:NP_598852Link to BLAST:NP_598852.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598852.3 750 Q8VCZ6 750 100% 0 0

Chromosomal Locations for CCDS 49673.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81002658 81002664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81003360 81003445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81003804 81003870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81006407 81006612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81006706 81006813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81007447 81007590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81007851 81008046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81008289 81008434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81008684 81008908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81009224 81009278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81009407 81009534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81009634 81009789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81009941 81009995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81010229 81010278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81010410 81010562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81010717 81010787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81010861 81010909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81010986 81011071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81011238 81011360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81011462 81011522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81011656 81011736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGTCAGGAAACCACACGCCTTCTGCCAGTGGCCCTTTCTCTGCCCTGACTCCAAGCATATGGCCCCAGG
AGATCCTGGCAAAATACTCACAGAAAGAAGAATCCTCAGAGCAGCCAGAGCTCTGCTATGATGAGTTTGG
TTTCCGTGTGGACAAGGAAGGTTCTGAGCCTGGATGCAGCCAGATGACAGGCTCACCCCTGGTGGAGGAC
CCCCCGCAGAGGCTACGTTGGCAGGCTCACCTGGAGTTCACCCATAACCATGATGTTGGGGATCTCACCT
GGGACAAGATTGCAGTCTCCCTCCCCCGCTCTGAGAAACTCCGTTCCCTAGTGCTGGCTGGCATCCCACA
TGGCATGAGGCCACAGTTGTGGATGCGGCTCTCTGGGGCGCTGCAGAAGAAGAAGAACTCTGAGTTGTCC
TACCGTGAGATTATAAAGAACAGCTCCAACGATGAGACCATCGCTGCCAAACAGATCGAAAAGGACCTGC
TCCGTACCATGCCCAGCAACGCCTGCTTTGCCAATGTGAACAGCATCGGTGTTCCCCGCCTGCGCAGAGT
CCTCCGAGCACTGGCCTGGCTCTACCCAGAGATTGGCTACTGCCAGGGCACAGGCATGGTGGCTGCTTGT
CTCCTGCTGTTCCTGGAGGAGGAGGATGCCTTCTGGATGATGTGTGCCATTATTGAGGACCTGCTGCCTG
CCTCCTACTTCAGCACTACCCTGCTGGGAGTCCAGACTGACCAGCGGGTCCTGCGCCACCTGATTGTCCA
GTACCTGCCTCGCTTAGACAAACTGTTGCAGGAGCACGACATTGAGCTGTCTCTTATCACGCTGCACTGG
TTCCTCACGGCCTTCGCCAGCGTGGTGCACATCAGACTGCTGCTGCGCATCTGGGACCTGTTTTTCTACG
AGGGCTCCCTGGTGTTGTTCCAGACTACGCTGGGCATGCTGCGCCTTAAGGAGGAAGAGCTGATACAGTC
TGAGAACTCAGCTTCCATCTTCAACACGCTGTCAGACATTCCTGCACAGATGGATGACGCAGAGCTGCTG
CTGGGGGAGGCCATGAGGCTGGCTGGCTCCCTCACTGATGTGGCCGTGGAGACCCAGCGTCGCAAGCACC
TGGCCTACCTTATTGCAGACCAAGGCCAAACCCTGGGGACGGGCACCACCACTAACCTCTCTCAGGTTGT
ACGGCGCAGGACGCAGCGGAGGAAGTCTGGTATCACTTCCCTGCTTTTTGGAGAGGACGACCTAGAAGCT
CTCAAGGCAAAGAACATCAAGCAAACAGAGCTGGTAGCCGACCTTCGCGAAGCCATTTTGCGTGTGGCAC
GCCACTTCCAGTGCACAGACCCCAAGAACTGTAGTGTGGAGCTGACCCCAGACTACAGCATGGAGAGCCA
CCAGCGGGACCATGAGAACTACGTGGCATGCTTACGCAGCCACCGGCGCCGGGCCAAGGCCCTGCTGGAC
TTTGAGCGGCACGATGATGATGAGCTAGGCTTCCGCAAAAATGACATCATCACGATCATTTCCCAGAAGG
ATGAGCACTGCTGGGTGGGTGAGCTGAACGGCCTGAGAGGCTGGTTTCCAGCCAAGTTTGTGGAGGTCCT
GGATGAGCGAAGCAAAGAGTACTCCATTGCGGGGGACGACTCTGTGACAGAAGGAGTAACAGACCTCGTG
CGAGGAACCCTCTGCCCAGCCCTCAAGGCCCTGTTTGAACACGGATTGAAGAAGCCATCCTTGCTTGGAG
GGGCTTGTCACCCCTGGCTGTTTATCGAGGAGGCAGCGGGCCGTGAAGTCGAAAGAGACTTTGATTCTGT
GTACTCCCGCCTGGTGCTCTGTAAGACATACAGGCTGGACGAAGATGGCAAAGTCCTGACCCCTGAAGAG
CTGCTGTACCGGGCAGTGCAGTCTGTGAATGTGACCCATGATGCAGCACACGCACAAATGGATGTCAAGC
TCCGCTCACTTATCTGCGTGGGGCTAAATGAACAGGTCCTACACCTGTGGCTGGAGGTTCTCTGCTCCAG
CCTGCCCACTGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGAAGCCCTGGCTGGGTCCAGATCAAG
TGTGAGCTCCGTGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCTGCTAGGAGAG
AGGAGGAAAAGCAGCCCCTGAAGGAGGGTGTGCAGGACATGCTGGTGAAGCACCATCTCTTCAGCTGGGA
CATAGATGGATGA

Translation (750 aa):
MSGNHTPSASGPFSALTPSIWPQEILAKYSQKEESSEQPELCYDEFGFRVDKEGSEPGCSQMTGSPLVED
PPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKKNSELS
YREIIKNSSNDETIAAKQIEKDLLRTMPSNACFANVNSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAAC
LLLFLEEEDAFWMMCAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHW
FLTAFASVVHIRLLLRIWDLFFYEGSLVLFQTTLGMLRLKEEELIQSENSASIFNTLSDIPAQMDDAELL
LGEAMRLAGSLTDVAVETQRRKHLAYLIADQGQTLGTGTTTNLSQVVRRRTQRRKSGITSLLFGEDDLEA
LKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACLRSHRRRAKALLD
FERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLV
RGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFDSVYSRLVLCKTYRLDEDGKVLTPEE
LLYRAVQSVNVTHDAAHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIK
CELRVLCCFAFSLSQDWELPARREEEKQPLKEGVQDMLVKHHLFSWDIDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH