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Report for CCDS49668.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49668.1 Public Mus musculus 15 Sox10 23 108 98 CCDS HistoryNCBI Gene:20665Re-query CCDS DB by CCDS ID:49668.1Re-query CCDS DB by GeneID:20665See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49668.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040019.4 ENSMUSP00000039466.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040019.4Link to Ensembl Protein Viewer:ENSMUSP00000039466.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040019Re-query CCDS DB by Protein ID:ENSMUSP00000039466
Original member Current member EBI ENSMUST00000230532.1 ENSMUSP00000155574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230532.1Link to Ensembl Protein Viewer:ENSMUSP00000155574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230532Re-query CCDS DB by Protein ID:ENSMUSP00000155574
Original member Current member NCBI NM_011437.1 NP_035567.1 Accepted alive Link to Nucleotide Sequence:NM_011437.1Link to Protein Sequence:NP_035567.1Re-query CCDS DB by Nucleotide ID:NM_011437Re-query CCDS DB by Protein ID:NP_035567Link to BLAST:NP_035567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035567.1 466 Q04888 466 100% 0 0

Chromosomal Locations for CCDS 49668.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79155938 79156641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79159135 79159403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79163289 79163716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGGCCGAGGAACAAGACCTATCAGAGGTGGAGCTGAGCCCTGTGGGCTCGGAGGAACCCCGCTGCCTGT
CCCCAGGCAGCGCGCCGTCGCTGGGACCCGACGGCGGCGGCGGTGGCTCGGGCTTGCGAGCCAGCCCGGG
GCCCGGTGAACTGGGCAAGGTCAAGAAGGAACAGCAGGACGGCGAGGCGGACGATGACAAGTTCCCCGTG
TGCATCCGCGAGGCGGTCAGCCAGGTGCTCAGCGGCTACGACTGGACGCTGGTGCCCATGCCCGTGCGCG
TCAACGGTGCCAGCAAGAGCAAGCCGCACGTCAAGAGGCCCATGAACGCCTTCATGGTGTGGGCACAGGC
GGCACGCAGAAAGCTAGCCGACCAGTACCCTCACCTCCACAATGCTGAGCTCAGCAAGACACTAGGCAAG
CTCTGGAGGTTGCTGAACGAAAGTGACAAGCGCCCCTTCATTGAGGAGGCTGAGAGGCTCCGGATGCAGC
ACAAAAAGGACCATCCGGACTACAAGTACCAACCTCGGCGGCGGAAGAACGGGAAGGCAGCCCAGGGGGA
GGCAGAATGCCCAGGCGGGGAAGCCGAGCAAGGAGGGGCTGCTGCTATTCAGGCTCACTACAAGAGTGCC
CACCTGGACCACCGGCACCCAGAAGAAGGCTCCCCCATGTCAGATGGGAACCCAGAGCACCCCTCAGGCC
AGAGCCATGGCCCCCCAACCCCTCCAACCACCCCAAAGACAGAGCTGCAGTCCGGCAAGGCAGACCCCAA
AAGGGATGGGCGCTCCTTGGGGGAGGGCGGGAAGCCCCACATCGACTTCGGCAACGTGGACATCGGGGAG
ATCAGCCACGAGGTAATGTCCAACATGGAAACCTTTGATGTGACTGAGCTGGACCAATACCTGCCACCCA
ACGGGCACCCAGGCCATGTGGGTAGCTACTCGGCAGCTGGCTACGGGCTGGGCAGTGCCCTGGCTGTGGC
CAGTGGACACTCTGCCTGGATCTCCAAGCCACCAGGTGTGGCTCTGCCCACGGTCTCGCCCCCTGGTGTG
GATGCCAAAGCCCAGGTGAAGACAGAGACCACAGGCCCCCAGGGACCCCCACACTACACCGACCAGCCGT
CCACTTCCCAGATCGCCTACACTTCCCTCAGTCTGCCCCACTACGGCTCCGCCTTCCCCTCCATCTCACG
ACCCCAGTTTGACTATTCTGACCATCAGCCCTCAGGACCCTATTATGGCCATGCAGGCCAGGCCTCTGGC
CTCTATTCAGCCTTTTCTTACATGGGGCCCTCCCAGCGGCCCCTCTACACTGCCATCTCTGACCCCAGCC
CCTCAGGGCCCCAATCCCACAGTCCCACACACTGGGAGCAGCCAGTATATACGACTCTATCCCGACCTTA
G

Translation (466 aa):
MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQDGEADDDKFPV
CIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGK
LWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGAAAIQAHYKSA
HLDHRHPEEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSGKADPKRDGRSLGEGGKPHIDFGNVDIGE
ISHEVMSNMETFDVTELDQYLPPNGHPGHVGSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGV
DAKAQVKTETTGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHAGQASG
LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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