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Report for CCDS49622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49622.1 Public Mus musculus 15 Sla 23 108 98 CCDS HistoryNCBI Gene:20491Re-query CCDS DB by CCDS ID:49622.1Re-query CCDS DB by GeneID:20491See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168522.1 ENSMUSP00000131865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168522.1Link to Ensembl Protein Viewer:ENSMUSP00000131865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168522Re-query CCDS DB by Protein ID:ENSMUSP00000131865
Original member NCBI NM_001029841.4 NP_001025012.1 Updated not alive Link to Nucleotide Sequence:NM_001029841.4Link to Protein Sequence:NP_001025012.1Re-query CCDS DB by Nucleotide ID:NM_001029841Re-query CCDS DB by Protein ID:NP_001025012
Current member NCBI NM_001029841.5 NP_001025012.1 Accepted alive Link to Nucleotide Sequence:NM_001029841.5Link to Protein Sequence:NP_001025012.1Re-query CCDS DB by Nucleotide ID:NM_001029841Re-query CCDS DB by Protein ID:NP_001025012Link to BLAST:NP_001025012.1

Chromosomal Locations for CCDS 49622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 66782542 66782755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66783609 66783756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66787037 66787168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66789682 66789785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66792225 66792311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66793681 66793780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66801431 66801528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66831570 66831580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGCTCTGCAGGCTTCGAGTACCTTCCACAGCTCAAGGAGAGAAAGAGATGGGGAATAGCATGAAATCCA
CATCTCCACCTTCGGAGAGGCCGTTATCCAGCAGTGAGGGACTTGAAAGTGACTTCCTGGCTGTGCTGAC
TGACTACCCATCTCCTGACATTAGCCCCCCAATATTCCGGAGAGGAGAGAAACTGCGTGTAATTTCTGAT
GAAGGGGGCTGGTGGAAAGCCATTTCTCTCAGCACTGGCCGGGAAAGTTATATTCCAGGGATATGTGTGG
CCAGAGTGTACCATGGCTGGCTGTTTGAAGGACTGGGCAGGGACAAGGCTGAGGAACTGCTGCAGCTGCC
AGATACAAAGATTGGTAGCTTCATGATTCGAGAGAGTGAAACAAAGAAAGGTTTCTATTCGCTGTCTGTG
AGACACAGGCAGGTGAAGCATTATCGAATCTTCCGTCTTCCCAACAACTGGTACTACATCTCACCAAGGC
TCACCTTCCAATGCCTGGAGGACCTGGTGACTCATTATTCTGAAGTGGCTGATGGTCTATGCTGTGTGCT
CACCACACCCTGTCTGGCACAGAACATACCTGCTCCAACATCCCACCCATCACCTTGCACCAGCCCTGGT
TCACCTGTCACCTTGCGCCAGAAGACCTTTGACTGGAAGAGGGTATCCAGATTGCAAGAAGGTTCAGAGG
GAGCAGAGAACCCACTCAGAGTGGACGAATCCCTTTTCAGCTATGGTCTTCGGGAAAGCATTGCCTCTTA
CCTGTCCCTGACAGGGGATGACAGCAGCTCCTTCGACCGGAAGAAGAAGAGTCTCTCCCTAATGTACACT
GGCAGCAAACGCAAGAGTTCCTTTTTTTCAGCACCCCAGTACTTTGAAGATTAA

Translation (297 aa):
MLCRLRVPSTAQGEKEMGNSMKSTSPPSERPLSSSEGLESDFLAVLTDYPSPDISPPIFRRGEKLRVISD
EGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKIGSFMIRESETKKGFYSLSV
RHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVTHYSEVADGLCCVLTTPCLAQNIPAPTSHPSPCTSPG
SPVTLRQKTFDWKRVSRLQEGSEGAENPLRVDESLFSYGLRESIASYLSLTGDDSSSFDRKKKSLSLMYT
GSKRKSSFFSAPQYFED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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