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Report for CCDS49575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49575.1 Public Mus musculus 15 Ptger4 23 108 98 CCDS HistoryNCBI Gene:19219Re-query CCDS DB by CCDS ID:49575.1Re-query CCDS DB by GeneID:19219See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120563.1 ENSMUSP00000112858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120563.1Link to Ensembl Protein Viewer:ENSMUSP00000112858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120563Re-query CCDS DB by Protein ID:ENSMUSP00000112858
Original member Current member NCBI NM_001136079.2 NP_001129551.1 Accepted alive Link to Nucleotide Sequence:NM_001136079.2Link to Protein Sequence:NP_001129551.1Re-query CCDS DB by Nucleotide ID:NM_001136079Re-query CCDS DB by Protein ID:NP_001129551Link to BLAST:NP_001129551.1

Chromosomal Locations for CCDS 49575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 5234632 5235222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 5242261 5243136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGTCCATCCCCGGAGTCAACGCGTCCTTCTCCTCCACTCCGGAGAGGCTGAACAGCCCGGTGACCATTC
CCGCAGTGATGTTCATCTTCGGGGTGGTGGGCAACCTGGTGGCCATCGTAGTATTGTGCAAGTCGCGCAA
GGAGCAGAAAGAGACGACCTTTTACACTCTAGTATGTGGGCTGGCTGTCACTGACCTTCTGGGCACCTTG
TTGGTAAGCCCGGTGACCATCGCCACATACATGAAGGGCCAGTGGCCCGGAGACCAGGCACTGTGTGACT
ATAGCACCTTCATCCTACTTTTCTTCGGTCTGTCGGGTCTCAGCATCATCTGTGCCATGAGCATCGAGCG
CTACCTGGCCATCAACCACGCCTACTTCTACAGCCACTACGTGGACAAGCGGCTGGCCGGCCTCACACTC
TTCGCCATCTATGCATCTAACGTGCTGTTCTGCGCGCTGCCCAACATGGGCCTGGGCAGATCCGAGCGGC
AGTACCCGGGCACCTGGTGCTTCATCGACTGGACCACCAACGTAACGGCCTACGCCGCCTTCTCTTACAT
GTACGCCGGCTTCAGCTCCTTCCTCATCCTTGCCACCGTGCTCTGCAACGTGCTGGTGTGCGGCGCGCTG
CTCCGCATGCACCGCCAGTTCATGCGCCGCACCTCGTTGGGCACGGAGCAGCACCATGCGGCTGCCGCCG
CCGCGGTAGCTTCGGTGGCCTGTCGGGGCCACGCTGGGGCCTCCCCAGCCCTGCAGCGCCTCAGCGACTT
TCGCCGCCGCAGGAGTTTCCGGCGCATCGCGGGTGCGGAGATCCAGATGGTCATCTTACTCATCGCCACC
TCTCTGGTGGTGCTCATCTGCTCCATTCCGCTCGTGGTGCGAGTGTTCATTAACCAGTTATATCAGCCAA
ACGTGGTGAAAGACATCAGCAGAAACCCAGATTTGCAGGCCATCAGGATTGCTTCTGTGAACCCCATCCT
GGACCCCTGGATTTACATCCTTCTTCGGAAGACTGTGCTCAGTAAAGCCATAGAGAAGATCAAGTGCCTC
TTCTGCCGCATTGGCGGTTCCGGCAGAGACAGCTCGGCCCAGCACTGCTCAGAGAGTCGGAGGACATCTT
CCGCCATGTCCGGCCACTCTCGCTCCTTCCTCGCCCGGGAGTTAAAGGAGATCAGCAGCACGTCCCAGAC
CCTCCTGTACCTGCCAGACCTGACTGAAAGCAGCCTCGGAGGCAGGAATTTGCTTCCAGGTTCGCATGGC
ATGGGCCTGACCCAAGCAGACACCACCTCGCTGAGAACTTTGCGAATTTCCGAGACCTCAGACTCCTCCC
AGGGCCAGGACTCTGAGAGTGTCCTGTTGGTGGATGAGGTTAGTGGGAGCCACAGAGAGGAGCCTGCCTC
TAAAGGAAACTCTCTGCAAGTCACATTCCCCAGTGAAACTCTGAAATTATCTGAAAAATGTATATAG

Translation (488 aa):
MSIPGVNASFSSTPERLNSPVTIPAVMFIFGVVGNLVAIVVLCKSRKEQKETTFYTLVCGLAVTDLLGTL
LVSPVTIATYMKGQWPGDQALCDYSTFILLFFGLSGLSIICAMSIERYLAINHAYFYSHYVDKRLAGLTL
FAIYASNVLFCALPNMGLGRSERQYPGTWCFIDWTTNVTAYAAFSYMYAGFSSFLILATVLCNVLVCGAL
LRMHRQFMRRTSLGTEQHHAAAAAAVASVACRGHAGASPALQRLSDFRRRRSFRRIAGAEIQMVILLIAT
SLVVLICSIPLVVRVFINQLYQPNVVKDISRNPDLQAIRIASVNPILDPWIYILLRKTVLSKAIEKIKCL
FCRIGGSGRDSSAQHCSESRRTSSAMSGHSRSFLARELKEISSTSQTLLYLPDLTESSLGGRNLLPGSHG
MGLTQADTTSLRTLRISETSDSSQGQDSESVLLVDEVSGSHREEPASKGNSLQVTFPSETLKLSEKCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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