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Report for CCDS49516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49516.1 Public Mus musculus 14 Spata13 23 108 98 CCDS HistoryNCBI Gene:219140Re-query CCDS DB by CCDS ID:49516.1Re-query CCDS DB by GeneID:219140See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022566.13 ENSMUSP00000022566.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022566.13Link to Ensembl Protein Viewer:ENSMUSP00000022566.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022566Re-query CCDS DB by Protein ID:ENSMUSP00000022566
Original member Current member EBI ENSMUST00000160973.7 ENSMUSP00000123928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160973.7Link to Ensembl Protein Viewer:ENSMUSP00000123928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160973Re-query CCDS DB by Protein ID:ENSMUSP00000123928
Original member NCBI NM_001033272.2 NP_001028444.1 Updated not alive Link to Nucleotide Sequence:NM_001033272.2Link to Protein Sequence:NP_001028444.1Re-query CCDS DB by Nucleotide ID:NM_001033272Re-query CCDS DB by Protein ID:NP_001028444
Current member NCBI NM_001033272.3 NP_001028444.1 Accepted alive Link to Nucleotide Sequence:NM_001033272.3Link to Protein Sequence:NP_001028444.1Re-query CCDS DB by Nucleotide ID:NM_001033272Re-query CCDS DB by Protein ID:NP_001028444Link to BLAST:NP_001028444.1

Chromosomal Locations for CCDS 49516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60690995 60692548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60706714 60707079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60709425 60709569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60745645 60745781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60746714 60746893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60747441 60747626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60749963 60750142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60751635 60751867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60753781 60753910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60756212 60756584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60759583 60759657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60760876 60761051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3735 nt):
ATGACAACAGCCCAGGATGGCCATGGGCAAGGTGCCACAGCCACTTGTTCAGCCTCCAACCCAAAGGCCC
CGAAAATGGTGACATCCTCAGCATGTCAGAATGGAGGCTGCAAAAGCAGCCCCAGCAGTGATCCCGAAGC
CGGGGAAACCAGGCTCAGCCCATCGAAGCTGGTACGTCTCTTCTCTGGTAGTCGGAAGAGGATGAATTCG
AACTCTGAGAGACCTCGCTCAGTCGTCCTTGTGGGGAATTCCTCCACGTGGAATGCCCTGGCCTCCTTCC
GTAAAATGGGCTCCTTTAAAAGACTAAAATCTTCTGTCCTTCAAGGAATTCAGAACCGGGAGGGGGCAGA
AGTTTCCAAGGAGGAGCCTACAGGAGACCCAGGAAGGGCTGCTCCCAATGGCACCGTTGCCATCCTGGGA
AAGGGCCTGGGCAGGTGTACATCCTTGGGCCCTGTAGGAGATGGCGCCGGGTCTGACTGCTCAGACCCCG
AGGACACGGAGGACGCCTTCCAGAGGAGCACACACCGTTCTCGCAGCATCCGCAGGGCCTATGGCCTGGG
CCGCATCAGCCTGCTGGACCTGGGGCGGCAGCCAGTGCCGGAGCCCGCCGTGTGTGAGATCCAAGTTCGA
GACCCTGAACCCAGCAGGGCTGTGCCTCTGCCACGCAGAAGCAAGAGCATCGACAGCTTGAGCGTCCTGA
AGAGCTCCTTCAAGCGCAAGTCTGCATCCAACCTCACGGAACTGCAGGGTGACAGGCAGGTTCCCTCCAG
AACCTTGAGCAGCTTCTTCACAGACCCGGAGAAGCCGGGTGGCTCAGAGAGAAGAACCAGACGCTGGAGG
AGCCCCATCCGGGCCAAGGACTTCGACAGAGTCCTGAGACTGGTGAGCAATGTCAAGGATGCGGCTTGGA
AGAGGGAGGCCCCCAGGAGTGCAGCCCCTGGCCCTGGTCCCGGTCTCGGGGATGAGAACCCACTACTTGC
GCCACGAAGCAAGCTACACGATGACTACTCGCGTCGTACTAGCAGCAGCGTGGAGCCAGATGCCAGGCGT
GGCGGCTCACCCTGTATCCCTGCACCATGCACCACTGCGCCCTACGCAGCTCCAGAGCCCCACTTAGATG
TGGATACTGCAGTATTCCCCCTGGAAACTAAAAGTGCTCAGCCACTGGGAAATGATGGACCTCGTGCCAG
CAGTCCCTCACCAATCCCCACGGACCCAGAAGGGTTGAGCCAAGGCTCCAGTGAGGCACATACTGGCAGC
CAACATCCTTTTAATCCCGTGCAGCTTCCCACTCCTCTGAGACCTACCACACCCAAGCCCCAAAGCCCTC
AGAGCCCAGGGAGTACTAAGTGCCCCAGTAGTCTGAGTGTGCTGTCCCTCAGTTCAGCGGACAGTGAAGA
GCGGACTGAGGATGCTTCGCACAGGCAACCGGGACCCGTGTCCCTCCAGGATACTGTCCTTAACGCTGCT
GGTGATGTGGGGGGAGAAAGCGGTGACAGCTATTTTCCCGAGAATCTCGATGGAGCCACCCATCCAGAAG
AGAAGAAGGAAGAGGTCCTGGTGACTGAGGATGACTGGCCGCAGGGCTCAGCCCTGGAGGAGGAGCAGAA
TGAGGCGCCTCGAATCTCCAGGAGGAGGTGGGGCTCGGGACGCCGCACCCGGCCACGACCACTGTCTGAC
TATGGCCAGCTGGCCGGCAGAAGCTTGTCCATTCCTGAAGATGCCATTGCTGCAGACCCTCCAGATGAGG
ACCACGTGGACAGGATGCACCCAGCAAGTGTGACTACCACCAGCCAGGATCCATGCGCCCCCTCAGGCTC
TTGCAGGGGAGGCCGGAGAAGGCGACCTATATCTGTGATTGGAGGGGTCAGCTTCTATGGCAACACCCAG
GTAGAGGATGTGGAGAACCTCTTGGTCCAACCAGCAGCCAGGCCTCCTGTGCCTGCACACCAAGTTCCAC
CCTACAAGGCTGTGTCTGCCCGCCTCCGGCCCTTCACCTTCTCTCAGAGCACTCCCATCGGGCTGGACCG
CGTGGGGCGGCGACGGCAGATGAAAACATCCAATGTCTCTTCAGATGGAGGTGCGGAGTCTTCGGCCTTA
GTGGATGATAATGGTAGTGAGGAAGACTTCAGCTATGAGGAGCTCTGCCAGGCCAACCCTCGGTACCTGC
AGCCAGGAGGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAGCACT
GTGGGACCATGTGACCATGGACGACCAGGAGCTGGGCTTCAAGGCTGGGGATGTCATCCAAGTTCTGGAA
GCTTCTAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTGCAAGCTTTGTTA
GGCTTCGAGTCAATCAGGAGGAGCTGCCCGAGAACTGCAGCAGCTCCCATGGGGAAGAGCAGGATGAGGA
CACCAGCAAAGCCCGCCACAAGCACCCAGAGAGCCAGCAGCAGATGCGGACCAACGTCATCCAGGAGATA
ATGAACACCGAGCGAGTGTATATCAAGCACCTGAAGGACATCTGCGAGGGCTATATCCGACAGTGTCGTA
AGCACACGGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAACATTGAAGACATTTACAAATT
CCAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTGAGTGAAATAGGA
TCCTGCTTTCTTGAGCACCAAGAGGGCTTCGCCATCTACTCTGAGTACTGCAACAACCACCCAGGCGCCT
GTGTGGAGCTGTCCAACCTCATGAAACACAGCAAGTACCGGCACTTCTTCGAGGCCTGCCGCCTGCTCCA
GCAGATGATCGACATCGCCCTGGACGGCTTCCTCCTCACGCCTGTGCAGAAGATCTGCAAATACCCGCTG
CAGCTGGCTGAGCTGCTCAAGTACACCACACAGGAGCACGGCGATTACAACAATATAAAGGCAGCCTATG
AAGCCATGAAGAACGTGGCCTGCTTGATCAATGAACGCAAGCGCAAGCTGGAGAGCATCGACAAGATCGC
CCGCTGGCAGGTGTCCATCGTAGGCTGGGAGGGCCTGGACATTCTAGACCGAAGCTCTGAGTTGATTCAT
TCCGGAGAGCTGACCAAAATCACCAGGCAGGGCAAGAGCCAGCAACGCATCTTCTTCCTTTTCGACCACC
AGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATACTACAAGGGCCGCATGGACATGGA
CGAGGTAGAGCTTGTGGACGTGGAGGATGGGCGGGACAAAGACTGGAGCCTCAGCCTGCGGAATGCCTTC
AAGCTGGTCAGCAAAGCCACGGACGAGGTCCATCTGTTCTGCGCCAGAAAGCAAGAAGACAAGGCCAGGT
GGCTGCAGGCCTATGCGGACGAGAGGCGGCGGGTGCAGGAGGACCAGCAGATGGGTATGGAAATCCCAGA
AAATCAGAAGAAACTCGCCATGTTGAACGCTCAGAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGC
TGTCCCGTGGCCCCACCCCACCAGAGCCTGCCGCCCCTTCACCAGCGCCACATCACTGTGCCCACCAGCA
TCCCGCAGCAGCAGGTCTTTGCCTTGGCTGAGCCCAAGAGGAAGCCATCGATATTCTGGCACACTTTCCA
CAAACTCACCCCCTTCCGGAAATGA

Translation (1244 aa):
MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGGCKSSPSSDPEAGETRLSPSKLVRLFSGSRKRMNS
NSERPRSVVLVGNSSTWNALASFRKMGSFKRLKSSVLQGIQNREGAEVSKEEPTGDPGRAAPNGTVAILG
KGLGRCTSLGPVGDGAGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLDLGRQPVPEPAVCEIQVR
DPEPSRAVPLPRRSKSIDSLSVLKSSFKRKSASNLTELQGDRQVPSRTLSSFFTDPEKPGGSERRTRRWR
SPIRAKDFDRVLRLVSNVKDAAWKREAPRSAAPGPGPGLGDENPLLAPRSKLHDDYSRRTSSSVEPDARR
GGSPCIPAPCTTAPYAAPEPHLDVDTAVFPLETKSAQPLGNDGPRASSPSPIPTDPEGLSQGSSEAHTGS
QHPFNPVQLPTPLRPTTPKPQSPQSPGSTKCPSSLSVLSLSSADSEERTEDASHRQPGPVSLQDTVLNAA
GDVGGESGDSYFPENLDGATHPEEKKEEVLVTEDDWPQGSALEEEQNEAPRISRRRWGSGRRTRPRPLSD
YGQLAGRSLSIPEDAIAADPPDEDHVDRMHPASVTTTSQDPCAPSGSCRGGRRRRPISVIGGVSFYGNTQ
VEDVENLLVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSNVSSDGGAESSAL
VDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLE
ASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPENCSSSHGEEQDEDTSKARHKHPESQQQMRTNVIQEI
MNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIG
SCFLEHQEGFAIYSEYCNNHPGACVELSNLMKHSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPL
QLAELLKYTTQEHGDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIH
SGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWSLSLRNAF
KLVSKATDEVHLFCARKQEDKARWLQAYADERRRVQEDQQMGMEIPENQKKLAMLNAQKAGHGKSKGYNS
CPVAPPHQSLPPLHQRHITVPTSIPQQQVFALAEPKRKPSIFWHTFHKLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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