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Report for CCDS49489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49489.1 Public Mus musculus 14 Arhgef40 23 108 98 CCDS HistoryNCBI Gene:268739Re-query CCDS DB by CCDS ID:49489.1Re-query CCDS DB by GeneID:268739See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100639.10 ENSMUSP00000098204.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100639.10Link to Ensembl Protein Viewer:ENSMUSP00000098204.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100639Re-query CCDS DB by Protein ID:ENSMUSP00000098204
Original member Current member NCBI NM_001145921.1 NP_001139393.1 Accepted alive Link to Nucleotide Sequence:NM_001145921.1Link to Protein Sequence:NP_001139393.1Re-query CCDS DB by Nucleotide ID:NM_001145921Re-query CCDS DB by Protein ID:NP_001139393Link to BLAST:NP_001139393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139393.1 1476 Q3UPH7-2 1476 100% 0 0

Chromosomal Locations for CCDS 49489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51984989 51984991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51987403 51987600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51988702 51989938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51990048 51990215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51990904 51991030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51991601 51991697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51991812 51991892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51992014 51992130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51994094 51994189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51994283 51994398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51994880 51995006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51996066 51996188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51996264 51996407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51996876 51997486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51997613 51997847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51998144 51998230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51999823 52000038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52000849 52001019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52002285 52002462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52003654 52003758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52004612 52004742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52004879 52004899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52004989 52005030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4431 nt):
ATGGAGCCTGAACCAGTGGAGGACTGTGTGCAGAGCACGCTTGCTGCCTTGTACCCGCCCTTTGAAGCCA
CAGCCCCAACCCTGTTGGGCCAGGTGTTCCAGGTGGTGGAGAGGACGTACCAGGAGGATGCGCTGAGGTA
CACGCTGGACTTCCTGGTACCTGCTAAACACCTGCTTGCCAAGGTCCAGCAGGAAGCCTGTGCCCAGTAT
AGTGGATTCCTCTTCTTCCACGAGGGCTGGCCACTCTGCTTGCATGAGCAGGTGGTAGTGCAGCTAGCGG
CCCTTCCCTGGCAGCTGCTGCGCCCTGGAGACTTCTACCTGCAGGTAGTGCCTTCAGCAGCCCAGGCACC
CCGGCTGGCACTGAAATGCCTGGCCCCAGGAGGTGGGCGGGTACAGGAGCTCCCAGTGCCCAGTGAAGCC
TGTGCCTACCTCTTCACACCTGAGTGGCTACAAGGCATTAACAAGGACCGGCCAACAGGGCGCCTCAGCA
CCTGCCTTCTGTCCGCCCCCTCCGGGATCCAGCGGCTGCCCTGGGCTGAGCTCGTCTGCCCACGATTTGT
GCACAAAGAGGGCCTCATGGTGGGACATCAACCAAGTACATTGCCTCCAGAACTGCCCTCTGGACCTCCA
GGTCTTCCCAGCTCTCCACTCCCTGAGGAGGTACTTGGTACCCGGAGTCCTGGGGATGGACACAACGCTC
CCGCAGAAGGTCCCGAGGGTGAATATGTGGAGCTGTTGGAGGTGACACTGCCTGTGAGGGGAAGCCCTGT
AGATGCTGAGGCCTCGGGCCTCTCCCGGACCCGCACAGTACCCGCCCGTAAGAGCACTGGAGGGAAGGGC
CGGCACCGGAGACACAGGGCGTGGATGAATCAGAAAGGCCTGGGATCTCGGGATCAGGATGGGACGCGGC
CGCCTGGTGAGGGAAGTAGCACCGGGGCCTCTTCCGACTCACCTTCAGGGGCTGAGGCAGACCCAGATGC
CACCGCCCTCCAGGCATCTGAGCCCCCGGCAGAGGCTCTCGGGGAAGCCCCTGAATCCTGCCTCCTGTCA
GGGGAGGCTGTGGGAGGAGTGGGCCAGGGGGCTGAAGGACCACCTGGTACCCCTCGAAGAACCGGCAAAG
GAAACAGAAGAAAGAAGCGAGCTGCGGGCAGAGGCGCTGGAAGCCGGGGAGGGGAGGGTACCTCACTCAG
CCCCAGGGACAAAGAAGAGACCAGACAGCAGGAAGTCCTTGTCAGTCTGCCCTCACCCAGTGAACAGGAA
CCTGCAGAATGCAGCCTGGTTAAGGAGAAAGAGGATTCTGGGAAGCAAGAGTCTGAATCAAAAGAGGAAC
TCAAGCCAGCAGATGAAAAAGAGCCTGCACGCCCAGAAGACTATGAGCCTCCAGAAGAGGAGATCAGAGA
GAGTGAGAAAGAGGAGTTGACCCCGCAGTGTACGGCAGGATCCACAGGTCCAGAGTGGTTCCCATCTGAG
CCCTCAACACAGCCCCTGGAGACTGTGCAGAATGTTAAAGGAGACAGCCTCCCAGAGGAAACTCCCCCAG
TTTCTGTTTTGGATGACCCAGTTGTAGCTTGGGACTTGATGGCATCTGGATTCTTCGTTCTGACTGGAGG
GGTAGATCAGACTGGGCGAGCTCTGCTGACAATCACGCCTCCACCTCCGTGCCTTCCTGAGGAGTCCTCA
CCCTCCCAAGAGACACTGAGCACTGCTCTCCGTTACCTCCACTCACTGCTTAGGCCTGATCTGCAGTTAC
TGGGGCTGACCATCCTCCTTGACCTTCGCAAGGCACCTCCACTGCCTCCAGCACTTCTTCCTGCCTTGAG
TCAGCTTCAGGACTCAGGCGAGCCTCCGCTCATTCAGCGGCTGGTGATCCTCATTCATGAAGACCCTCCA
GCTGAACTCTGTGGATTTCAGGGAGCTGAGTTGCTGTCAGAGAAGGATCTGAAAAGAGTGGCCAAGCCAG
AGGAGCTACAGTGGGACTTAGGAGGTCACAGGGACCTCTCCCCCAACCACTGGGCAGAGATACATCAGGA
AGTGGCAAGGCTATGCACCTTGTGCCAAGGCGTGTTGACCTCCGTACGGCAGGCCATTGAGGAGCTAGAG
GGAACAGCAGAACCCAAAGAAGAGGAGGCCGTGGGAATGCCTGAGCCTCTGCAAAAGGTGCTGGCAGATC
CTCGGCTGACAGCACTACAGAGGAACGGAGGAGCCATCCTGATGCGCCTGCGCTCCGCCCACAGCAGCAA
GCTAGAGGGCCCAGGCCCAGCTGAGCTATACCAGGAGGTAGATGAGGCCATTCACCAACTTGTGCGTCTG
TCCAACCTACGAGTGCAGCAGCAGGAAGAACGGCAGCGCCTGCGCCAAGTCCAGCAGGTGTTGCAGTGGC
TGTCTGGCCCAGGAGAAGAGCAGCTGGCAAGCTTCTCCATGCCGGGGAACTCACTGTCAGTCTTGCAAGA
GACAGAACTTCGATTCAGGGCTTTTAGCACAGAAGTGCAGGAGCGCCTAGTCCAAGCCCGGGAAGCTTTG
GCTCTGGAGGAGGACCTTACCTCCCAGAAAGTTCTAGACATCTTTGAACAACGGTTGGAGCAGGCTGAGA
GCGGCCTCCACCGGGCCCTCAGGCTACAGCGCTTCTTCCAGCAGGCACACGAATGGGTAGATGAGGGCTC
TGCTCGGCTGGCAGGAGCTGGGTCTGGTCGTGAAGCTCTGCTGGCAGCCCTAGCCCTGCGGAGGGCCCCA
GAACCCAGTGCAGGCACCTTCCAAGAGATGCGAGCCCTGGCCCTGGACTTGGGCAGCCCCGCAGCCCTTC
GAGAGTGGGGCCGATGTCGGGCACGCTGCCAGGAGCTGGAAAGAAGGATTCAGCAGCAGCTGGGAGAGGA
GGCCAGTCCTAGAAGCCACCGACGACGTCGGGCAGACAGTGCCAGCAGCGCAGGGGCCCAGCACGGAGCC
CATAGCCCTTCACCCAGCCTCAGTTCCCTGCTGCTTCCCAGCAGCCCTGGGCCACGGGCAGCCCCATCAC
ATTGCTCTCTGACCCCATGTGGGGAGGATTATGAGGAAGAAGGCCTTGAGCTAGCTCCAGAAACAGATGG
AAGACCCCCAAGGGCTGTGCTAATCCGAGGACTGGAGGTCACCAGTACTGAAGTGGTAGACAGGACATGT
TCGCCCCGAGAACACGTACTATTGGGCCGGGCTGGAGGGCCAGATGGACCCTGGGGAATAGGTACCCCTC
GAATGGAACGCAAACGAAGCATCAGCGCCCAGCAGCGTCTAGTGTCTGAACTGATTGCCTGTGAGCAGGA
GTACGTAACCACCCTGAATGAGCCAGTGCCGCTGCCTGGGCCTGAGCTAACGCCTGAGCTTCGATGCACC
TGGGCTGCAGCCCTGAGTGTCCGAGAGAGGCTTCGCAGCTTCCACGGGACACACTTTCTACAAGAGCTTC
AGGGCTGCGCCGCCCACCCCCTGCGCATTGGGGCCTGCTTCCTTCGCCATGGGGATCAGTTCAACCTCTA
TGCACAGTTCGTGAAGCACAGGCATAAACTGGAGAGTGGTCTGGCTGCGCTCACCCCCTCGGTCAAGGGT
TCCATGGAGAGCAGCCCTTGCTTGCCCCGGGCCCTGCAGCAGCCACTGGAGCAGCTGGCTCGGTATGGAC
AGCTCCTGGAGGAGCTCCTGAGGGAAGCCGGGCCTGAGCTAAGCTCTGAACGCCAGGCCCTCAGGGCCGC
TGTACAGTTGCTCCAGGAACAAGAGGCCCGAGGCAGAGATCTGCTTGCTGTGGAAGCTGTTCGAGGCTGT
GAGATAGATCTAAAGGAACAGGGACAGCTCTTGCATCGGGACCCTTTCACTGTCATCTGTGGCCGGAAAA
AGTGCCTCCGCCACGTCTTCCTGTTTGAGGACCTGCTCTTATTCAGCAAGCTCAAGGGATCTGAAGGAGG
ATCCGAGACCTTCGTTTACAAGCAGGCTTTCAAGACCGCTGACATGGGGCTGACAGAAAACATCGGGGAC
AGTGGACTCTGTTTCGAACTATGGTTTCGACGACGGCGTGCAAGAGAAGCATACACGTTGCAGGCTACTT
CGCCAGAGACCAAACTCAAGTGGACAAGTTCTATTGCCCAGCTGCTGTGGAGACAGGCAGCCCACAACAA
GGAACTCCGAGTGCAGCAGATGGTTTCCATGGGCATTGGGAATAAACCTTTCCTGGACATTAAAGCCCTT
GGGGAACGGACACTGAGTGCCCTGCTCACTGGAAGAGCCTCAGAAACACTTGATTCTTCTGGAGATGTGT
CCCCAGGACCACGAAACAGCCCCAGCCTGCAGCCCCCCAGCCCTGGGAGCAGTACTCCCGCTCTGACCAG
TGGAGGGATCTTAGGGCTCTCTCGGCAGGCCTGGCTGAGAGGCATCAAGAGTCATTCCCGAGCCCTGAGT
GACCCCACCACGCCTCTGTGA

Translation (1476 aa):
MEPEPVEDCVQSTLAALYPPFEATAPTLLGQVFQVVERTYQEDALRYTLDFLVPAKHLLAKVQQEACAQY
SGFLFFHEGWPLCLHEQVVVQLAALPWQLLRPGDFYLQVVPSAAQAPRLALKCLAPGGGRVQELPVPSEA
CAYLFTPEWLQGINKDRPTGRLSTCLLSAPSGIQRLPWAELVCPRFVHKEGLMVGHQPSTLPPELPSGPP
GLPSSPLPEEVLGTRSPGDGHNAPAEGPEGEYVELLEVTLPVRGSPVDAEASGLSRTRTVPARKSTGGKG
RHRRHRAWMNQKGLGSRDQDGTRPPGEGSSTGASSDSPSGAEADPDATALQASEPPAEALGEAPESCLLS
GEAVGGVGQGAEGPPGTPRRTGKGNRRKKRAAGRGAGSRGGEGTSLSPRDKEETRQQEVLVSLPSPSEQE
PAECSLVKEKEDSGKQESESKEELKPADEKEPARPEDYEPPEEEIRESEKEELTPQCTAGSTGPEWFPSE
PSTQPLETVQNVKGDSLPEETPPVSVLDDPVVAWDLMASGFFVLTGGVDQTGRALLTITPPPPCLPEESS
PSQETLSTALRYLHSLLRPDLQLLGLTILLDLRKAPPLPPALLPALSQLQDSGEPPLIQRLVILIHEDPP
AELCGFQGAELLSEKDLKRVAKPEELQWDLGGHRDLSPNHWAEIHQEVARLCTLCQGVLTSVRQAIEELE
GTAEPKEEEAVGMPEPLQKVLADPRLTALQRNGGAILMRLRSAHSSKLEGPGPAELYQEVDEAIHQLVRL
SNLRVQQQEERQRLRQVQQVLQWLSGPGEEQLASFSMPGNSLSVLQETELRFRAFSTEVQERLVQAREAL
ALEEDLTSQKVLDIFEQRLEQAESGLHRALRLQRFFQQAHEWVDEGSARLAGAGSGREALLAALALRRAP
EPSAGTFQEMRALALDLGSPAALREWGRCRARCQELERRIQQQLGEEASPRSHRRRRADSASSAGAQHGA
HSPSPSLSSLLLPSSPGPRAAPSHCSLTPCGEDYEEEGLELAPETDGRPPRAVLIRGLEVTSTEVVDRTC
SPREHVLLGRAGGPDGPWGIGTPRMERKRSISAQQRLVSELIACEQEYVTTLNEPVPLPGPELTPELRCT
WAAALSVRERLRSFHGTHFLQELQGCAAHPLRIGACFLRHGDQFNLYAQFVKHRHKLESGLAALTPSVKG
SMESSPCLPRALQQPLEQLARYGQLLEELLREAGPELSSERQALRAAVQLLQEQEARGRDLLAVEAVRGC
EIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEDLLLFSKLKGSEGGSETFVYKQAFKTADMGLTENIGD
SGLCFELWFRRRRAREAYTLQATSPETKLKWTSSIAQLLWRQAAHNKELRVQQMVSMGIGNKPFLDIKAL
GERTLSALLTGRASETLDSSGDVSPGPRNSPSLQPPSPGSSTPALTSGGILGLSRQAWLRGIKSHSRALS
DPTTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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