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Report for CCDS4942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4942.1 Public Homo sapiens 6 EFHC1 24 110 108 CCDS HistoryNCBI Gene:114327Re-query CCDS DB by CCDS ID:4942.1Re-query CCDS DB by GeneID:114327See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371068.11 ENSP00000360107.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371068.11Link to Ensembl Protein Viewer:ENSP00000360107.4Re-query CCDS DB by Nucleotide ID:ENST00000371068Re-query CCDS DB by Protein ID:ENSP00000360107
Original member Current member NCBI NM_018100.4 NP_060570.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018100.4Link to Protein Sequence:NP_060570.2Re-query CCDS DB by Nucleotide ID:NM_018100Re-query CCDS DB by Protein ID:NP_060570Link to BLAST:NP_060570.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060570.2 640 Q5JVL4-1 640 100% 0 0

Chromosomal Locations for CCDS 4942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52420411 52420473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52423946 52424167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52438304 52438591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52452688 52452837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52454095 52454287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52464895 52465115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52469333 52469473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52479037 52479250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52479640 52479787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52490140 52490350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52492270 52492341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGTGTCCAATCCCGTGCATGGCTTGCCCTTTCTTCCGGGCACGTCCTTTAAGGACTCTACGAAAACAG
CCTTCCACAGAAGTCAGACGCTGAGCTACAGGAACGGCTATGCAATTGTTCGACGTCCAACAGTTGGGAT
AGGCGGAGACCGGCTCCAGTTCAACCAGCTGTCCCAGGCTGAGCTGGATGAGTTGGCCAGTAAGGCACCA
GTCTTAACTTATGGCCAACCTAAACAAGCCCCACCTGCGGATTTTATTCCTGCGCATGTGGCCTTTGACA
AAAAGGTACTGAAATTTGATGCCTATTTCCAAGAAGATGTTCCTATGTCAACTGAGGAACAGTATAGGAT
CCGTCAGGTGAACATTTACTATTATCTAGAAGATGACAGCATGTCTGTCATAGAGCCTGTTGTAGAAAAT
TCTGGAATCCTTCAAGGCAAGTTAATAAAACGCCAGCGGCTAGCCAAGAATGACCGGGGTGACCATTACC
ATTGGAAAGACCTAAATCGAGGAATAAACATCACAATTTATGGCAAAACTTTCCGCGTTGTTGACTGTGA
CCAATTCACACAGGTATTTTTAGAAAGCCAAGGAATTGAGTTAAATCCACCAGAGAAGATGGCTCTTGAT
CCTTACACTGAACTCCGAAAACAGCCTCTTCGTAAGTATGTCACCCCATCAGACTTTGATCAACTCAAGC
AATTTCTCACCTTTGACAAACAGGTCCTTCGATTCTATGCAATCTGGGATGATACAGACAGCATGTATGG
TGAATGTCGGACCTACATCATTCATTACTATCTTATGGATGATACGGTGGAAATTCGAGAGGTCCACGAA
CGGAATGATGGGAGAGATCCTTTCCCACTCCTAATGAACCGCCAGCGTGTGCCCAAAGTTTTGGTGGAAA
ATGCAAAGAACTTCCCTCAGTGTGTGCTAGAAATCTCTGACCAAGAAGTGTTGGAATGGTATACTGCTAA
AGACTTCATTGTTGGGAAGTCACTCACTATCCTTGGGAGAACTTTCTTCATTTATGATTGTGATCCATTT
ACTCGACGGTATTACAAAGAGAAGTTTGGAATCACTGATTTACCACGTATTGATGTGAGCAAGCGGGAAC
CACCTCCAGTAAAACAGGAGTTGCCTCCTTATAACGGTTTTGGACTAGTGGAAGATTCTGCTCAGAATTG
TTTTGCTCTCATTCCAAAAGCTCCAAAAAAAGACGTTATTAAAATGCTGGTGAATGATAACAAGGTGCTT
CGTTATTTGGCTGTACTGGAATCCCCCATCCCAGAAGACAAAGACCGCAGATTTGTCTTCTCTTACTTTC
TAGCTACCGACATGATCAGTATCTTTGAGCCTCCTGTTCGCAATTCTGGTATCATTGGGGGCAAGTACCT
TGGCAGGACTAAAGTTGTTAAACCATACTCTACAGTGGACAACCCTGTCTACTATGGCCCCAGTGACTTC
TTCATTGGTGCTGTGATTGAAGTGTTTGGTCACCGGTTCATCATCCTTGATACAGACGAGTATGTTTTGA
AATACATGGAGAGCAACGCTGCCCAGTATTCACCAGAAGCACTCGCGTCAATTCAGAACCATGTCCGAAA
GCGAGAAGCGCCTGCTCCAGAAGCAGAAAGCAAGCAAACTGAAAAGGATCCAGGCGTGCAGGAATTGGAA
GCATTAATAGACACAATTCAGAAGCAACTGAAAGATCACTCATGCAAAGACAACATTCGTGAGGCATTTC
AAATTTATGACAAGGAAGCTTCAGGATATGTGGACAGAGACATGTTCTTTAAAATCTGTGAATCGCTTAA
CGTCCCAGTGGATGACTCCTTGGTTAAGGAGTTAATCAGGATGTGCTCTCATGGAGAAGGCAAAATTAAC
TACTATAACTTTGTTCGTGCTTTCTCAAACTGA

Translation (640 aa):
MVSNPVHGLPFLPGTSFKDSTKTAFHRSQTLSYRNGYAIVRRPTVGIGGDRLQFNQLSQAELDELASKAP
VLTYGQPKQAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVVEN
SGILQGKLIKRQRLAKNDRGDHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFLESQGIELNPPEKMALD
PYTELRKQPLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHE
RNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGRTFFIYDCDPF
TRRYYKEKFGITDLPRIDVSKREPPPVKQELPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVL
RYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDF
FIGAVIEVFGHRFIILDTDEYVLKYMESNAAQYSPEALASIQNHVRKREAPAPEAESKQTEKDPGVQELE
ALIDTIQKQLKDHSCKDNIREAFQIYDKEASGYVDRDMFFKICESLNVPVDDSLVKELIRMCSHGEGKIN
YYNFVRAFSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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