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Report for CCDS49415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49415.1 Public Mus musculus 14 Lrmda 23 108 98 CCDS HistoryNCBI Gene:76633Re-query CCDS DB by CCDS ID:49415.1Re-query CCDS DB by GeneID:76633See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075639.10 ENSMUSP00000075065.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075639.10Link to Ensembl Protein Viewer:ENSMUSP00000075065.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075639Re-query CCDS DB by Protein ID:ENSMUSP00000075065
Original member Current member NCBI NM_028275.1 NP_082551.1 Accepted alive Link to Nucleotide Sequence:NM_028275.1Link to Protein Sequence:NP_082551.1Re-query CCDS DB by Nucleotide ID:NM_028275Re-query CCDS DB by Protein ID:NP_082551Link to BLAST:NP_082551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082551.1 229 Q9D9B4 229 100% 0 0

Chromosomal Locations for CCDS 49415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 22019879 22019908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22027227 22027327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22577848 22577974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22584406 22584545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22596425 22596542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22828689 22828782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23055955 23056034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCTGGGCTCATGGTCAGTGGAACTCAAGTGTCCTACGTAGGCCAGTCCTGCAGAGAAATTCCAGAGC
ACCTGGGCCGGGACTTTGGACATTTTGCAAAGAGACTTGACCTGAGCTTCAACCTCTTGAGGTCACTGGA
AGGACTGAGTGCATTCAGGAGCCTGGAGGAGCTCATTTTAGACAACAATCTGCTCGGAGACGACCTCGTG
TTGCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTACCGACTTGGAGTACCTCC
TTGATCACCTGGCAGAAGTGACACCATCCTTAGAGTACCTCAGCCTCCTGGGAAACGTGGCATGTCCCAA
TGAGCTGGTCAACTTGGAGAAGGATGAGGAAGACTATAAGAGATACAGGTGCTTTGTTCTGCACAAGCTG
CCCAAGTTGAAGTTTCTGGATGCCCAGAAAGTCACCAGACAAGAACGGGAGGAGGCATTGGTCAGAGGGG
CCTTCATGAAGGTGGTGAAACCCAAGGCTTCCAGTGAGGAGGAGAAGGCTGCTGCTCCTGAGAACCAGCC
CCAGTACACACCCTTGCCTTCTGGATCCAGAGATCTCACCAGTCATCGAGGCGTCCTCGGGAAAGGTCGC
TATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGA

Translation (229 aa):
MAGLMVSGTQVSYVGQSCREIPEHLGRDFGHFAKRLDLSFNLLRSLEGLSAFRSLEELILDNNLLGDDLV
LPGLPHLHTLTLNKNQITDLEYLLDHLAEVTPSLEYLSLLGNVACPNELVNLEKDEEDYKRYRCFVLHKL
PKLKFLDAQKVTRQEREEALVRGAFMKVVKPKASSEEEKAAAPENQPQYTPLPSGSRDLTSHRGVLGKGR
YFYYGRNSEGNRFIRDDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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