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Report for CCDS4923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4923.1 Public Homo sapiens 6 OPN5 24 110 108 CCDS HistoryNCBI Gene:221391Re-query CCDS DB by CCDS ID:4923.1Re-query CCDS DB by GeneID:221391See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371211.7 ENSP00000360255.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371211.7Link to Ensembl Protein Viewer:ENSP00000360255.2Re-query CCDS DB by Nucleotide ID:ENST00000371211Re-query CCDS DB by Protein ID:ENSP00000360255
Original member Current member NCBI NM_181744.4 NP_859528.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181744.4Link to Protein Sequence:NP_859528.1Re-query CCDS DB by Nucleotide ID:NM_181744Re-query CCDS DB by Protein ID:NP_859528Link to BLAST:NP_859528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859528.1 354 Q6U736 354 100% 0 0

Chromosomal Locations for CCDS 4923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47782067 47782196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47786515 47786634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47791802 47791972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47795229 47795563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47808154 47808395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47811674 47811731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47823983 47823991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCGTTAAATCACACTGCCCTGCCTCAGGACGAGCGCCTGCCCCATTACCTTCGAGATGGGGATCCTT
TTGCTTCCAAACTTTCTTGGGAAGCGGATTTAGTGGCTGGCTTTTACCTAACAATAATTGGGATTCTGTC
CACATTTGGAAATGGATATGTCCTTTACATGTCTTCTAGACGAAAGAAGAAGCTGAGACCCGCTGAAATA
ATGACTATCAATTTAGCAGTCTGTGATCTGGGGATTTCAGTTGTAGGCAAGCCGTTCACCATCATCTCTT
GCTTTTGTCACCGCTGGGTGTTTGGCTGGATCGGCTGCCGCTGGTATGGATGGGCTGGATTTTTCTTTGG
CTGTGGAAGCCTTATCACCATGACTGCTGTCAGCCTGGATCGATATTTGAAAATCTGCTATTTATCTTAT
GGGGTTTGGCTGAAAAGAAAGCACGCCTACATCTGCCTGGCAGCCATCTGGGCCTATGCTTCCTTCTGGA
CCACCATGCCCTTGGTAGGTCTGGGGGACTACGTACCTGAGCCCTTCGGAACCTCGTGCACCCTGGACTG
GTGGCTGGCCCAGGCCTCGGTAGGGGGCCAGGTTTTCATCCTGAACATCCTCTTCTTCTGCCTCTTGCTC
CCAACGGCTGTGATCGTGTTCTCCTACGTAAAGATCATTGCCAAGGTTAAGTCCTCTTCCAAAGAAGTAG
CTCATTTCGACAGTCGGATCCATAGCAGCCATGTGCTGGAAATGAAACTGACAAAGGTAGCGATGTTGAT
TTGTGCTGGATTCCTGATTGCCTGGATTCCTTATGCAGTGGTGTCTGTGTGGTCAGCTTTTGGAAGGCCA
GACTCCATTCCCATACAGCTCTCTGTGGTGCCAACCCTACTTGCAAAATCTGCAGCGATGTACAATCCCA
TCATTTACCAAGTTATTGATTACAAATTTGCCTGTTGCCAAACTGGTGGTTTGAAAGCAACCAAGAAGAA
GTCTCTGGAAGGCTTCAGGCTGCACACCGTAACCACAGTCAGGAAGTCTTCTGCTGTGCTGGAAATTCAT
GAAGAGTGGGAATAA

Translation (354 aa):
MALNHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKKKLRPAEI
MTINLAVCDLGISVVGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSY
GVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFFCLLL
PTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRP
DSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIH
EEWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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