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Report for CCDS49229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49229.1 Public Mus musculus 13 Bphl 23 108 98 CCDS HistoryNCBI Gene:68021Re-query CCDS DB by CCDS ID:49229.1Re-query CCDS DB by GeneID:68021See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040656.7 ENSMUSP00000046168.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040656.7Link to Ensembl Protein Viewer:ENSMUSP00000046168.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040656Re-query CCDS DB by Protein ID:ENSMUSP00000046168
Original member NCBI NM_026512.1 NP_080788.1 Updated not alive Link to Nucleotide Sequence:NM_026512.1Link to Protein Sequence:NP_080788.1Re-query CCDS DB by Nucleotide ID:NM_026512Re-query CCDS DB by Protein ID:NP_080788
Current member NCBI NM_026512.2 NP_080788.1 Accepted alive Link to Nucleotide Sequence:NM_026512.2Link to Protein Sequence:NP_080788.1Re-query CCDS DB by Nucleotide ID:NM_026512Re-query CCDS DB by Protein ID:NP_080788Link to BLAST:NP_080788.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080788.1 291 Q8R164 291 100% 0 0

Chromosomal Locations for CCDS 49229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 34037663 34037769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34044424 34044527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34046786 34046952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34050281 34050434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34060434 34060565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34063910 34064033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 34073676 34073763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGACCGCAACAGTTCGCCCGGCGGCCCAGCGGTTGCGGCTGCTCCTCTCGCCCCTGAAATCCCGGA
TCTGCGTACCCCAGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAA
TGGCGTTCACCTGCATTACCAGCGCGTGGGAGAAGGGGAACATGCGATCCTCCTGCTTCCTGGGATGTTG
GGTAGCGGAAAGACCGATTTTGCACCTCAGCTTCAGAGCCTAAATAAGAAGCGCTTCACATTGGTGGCCT
GGGACCCTCGAGGATATGGATATTCCAGACCCCCAGATCGAGATTTTCCACGGGATTTTTTTGAAAGGGA
TGCAAAGGATGCTGTTGACTTGATGAAGGCTCTACAGTTCAAGCAGGTCTCCCTCCTGGGCTGGAGTGAT
GGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAG
CAAATGCCTATGTCACCGAGGAAGACAGCAGGATTTACCAGGGTATCCGAGATGTTTCTAAATGGAGTGA
GAAGGCAAGGAAACCCCTGGAAGCCCTGTATGGATATGACTACCTTGCCAAAACCTGTGAGGACTGGGTG
GATGGCATAAGCCAGTTTAAACAACTGCCAGAGGGTAACATCTGCCGGCACTTGCTGCCCCTGGTCCAGT
GCCCTACCCTCATTGTGCATGGGGAGAAGGACCCATTGGTCCCCCGCTTTCATGCTGACTTCCTTCTCCA
GCATGTGAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGAC
GAATTCAACAGGTTGGTAGAAGACTTTCTACAGTGA

Translation (291 aa):
MATATVRPAAQRLRLLLSPLKSRICVPQAEPVATFGTAVTSAKVAVNGVHLHYQRVGEGEHAILLLPGML
GSGKTDFAPQLQSLNKKRFTLVAWDPRGYGYSRPPDRDFPRDFFERDAKDAVDLMKALQFKQVSLLGWSD
GGITALIAAAKYPSYIRKMVIWGANAYVTEEDSRIYQGIRDVSKWSEKARKPLEALYGYDYLAKTCEDWV
DGISQFKQLPEGNICRHLLPLVQCPTLIVHGEKDPLVPRFHADFLLQHVKGSRLHLMPEGKHNLHLRFAD
EFNRLVEDFLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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