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Report for CCDS4919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4919.1 Public Homo sapiens 6 ADGRF5 24 110 108 CCDS HistoryNCBI Gene:221395Re-query CCDS DB by CCDS ID:4919.1Re-query CCDS DB by GeneID:221395See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265417.7 ENSP00000265417.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265417.7Link to Ensembl Protein Viewer:ENSP00000265417.6Re-query CCDS DB by Nucleotide ID:ENST00000265417Re-query CCDS DB by Protein ID:ENSP00000265417
Original member Current member EBI ENST00000283296.12 ENSP00000283296.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283296.12Link to Ensembl Protein Viewer:ENSP00000283296.7Re-query CCDS DB by Nucleotide ID:ENST00000283296Re-query CCDS DB by Protein ID:ENSP00000283296
Original member Current member NCBI NM_001098518.2 NP_001091988.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098518.2Link to Protein Sequence:NP_001091988.1Re-query CCDS DB by Nucleotide ID:NM_001098518Re-query CCDS DB by Protein ID:NP_001091988Link to BLAST:NP_001091988.1
Original member Current member NCBI NM_015234.5 NP_056049.4 Accepted alive Link to Nucleotide Sequence:NM_015234.5Link to Protein Sequence:NP_056049.4Re-query CCDS DB by Nucleotide ID:NM_015234Re-query CCDS DB by Protein ID:NP_056049Link to BLAST:NP_056049.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091988.1 1346 Q8IZF2-1 1346 100% 0 0
NP_056049.4 1346 Q8IZF2-1 1346 100% 0 0

Chromosomal Locations for CCDS 4919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 46853992 46854071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46855974 46856058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46856718 46856777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46856867 46856908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46858129 46859523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46860715 46860894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46862888 46863096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46865042 46865197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46866925 46867137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46868883 46869092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46871843 46872013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46878202 46878405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46879818 46880039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46881455 46881597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46882049 46882107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46883559 46883665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46884095 46884271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46888335 46888505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46900029 46900083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46906661 46906762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4041 nt):
ATGAAATCCCCAAGGAGAACCACTTTGTGCCTCATGTTTATTGTGATTTATTCTTCCAAAGCTGCACTGA
ACTGGAATTACGAGTCTACTATTCATCCTTTGAGTCTTCATGAACATGAACCAGCTGGTGAAGAGGCACT
GAGGCAAAAACGAGCCGTTGCCACAAAAAGTCCTACGGCTGAAGAATACACTGTTAATATTGAGATCAGT
TTTGAAAATGCATCCTTCCTGGATCCTATCAAAGCCTACTTGAACAGCCTCAGTTTTCCAATTCATGGGA
ATAACACTGACCAAATTACCGACATTTTGAGCATAAATGTGACAACAGTCTGCAGACCTGCTGGAAATGA
AATCTGGTGCTCCTGCGAGACAGGTTATGGGTGGCCTCGGGAAAGGTGTCTTCACAATCTCATTTGTCAA
GAGCGTGACGTCTTCCTCCCAGGGCACCATTGCAGTTGCCTTAAAGAACTGCCTCCCAATGGACCTTTTT
GCCTGCTTCAGGAAGATGTTACCCTGAACATGAGAGTCAGACTAAATGTAGGCTTTCAAGAAGACCTCAT
GAACACTTCCTCCGCCCTCTATAGGTCCTACAAGACCGACTTGGAAACAGCGTTCCGGAAGGGTTACGGA
ATTTTACCAGGCTTCAAGGGCGTGACTGTGACAGGGTTCAAGTCTGGAAGTGTGGTTGTGACATATGAAG
TCAAGACTACACCACCATCACTTGAGTTAATACATAAAGCCAATGAACAAGTTGTACAGAGCCTCAATCA
GACCTACAAAATGGACTACAACTCCTTTCAAGCAGTTACTATCAATGAAAGCAATTTCTTTGTCACACCA
GAAATCATCTTTGAAGGGGACACAGTCAGTCTGGTGTGTGAAAAGGAAGTTTTGTCCTCCAATGTGTCTT
GGCGCTATGAAGAACAGCAGTTGGAAATCCAGAACAGCAGCAGATTCTCGATTTACACCGCACTTTTCAA
CAACATGACTTCGGTGTCCAAGCTCACCATCCACAACATCACTCCAGGTGATGCAGGTGAATATGTTTGC
AAACTGATATTAGACATTTTTGAATATGAGTGCAAGAAGAAAATAGATGTTATGCCCATCCAAATTTTGG
CAAATGAAGAAATGAAGGTGATGTGCGACAACAATCCTGTATCTTTGAACTGCTGCAGTCAGGGTAATGT
TAATTGGAGCAAAGTAGAATGGAAGCAGGAAGGAAAAATAAATATTCCAGGAACCCCTGAGACAGACATA
GATTCTAGCTGCAGCAGATACACCCTCAAGGCTGATGGAACCCAGTGCCCAAGCGGGTCGTCTGGAACAA
CAGTCATCTACACTTGTGAGTTCATCAGTGCCTATGGAGCCAGAGGCAGTGCAAACATAAAAGTGACATT
CATCTCTGTGGCCAATCTAACAATAACCCCGGACCCAATTTCTGTTTCTGAGGGACAAAACTTTTCTATA
AAATGCATCAGTGATGTGAGTAACTATGATGAGGTTTATTGGAACACTTCTGCTGGAATTAAAATATACC
AAAGATTTTATACCACGAGGAGGTATCTTGATGGAGCAGAATCAGTACTGACAGTCAAGACCTCGACCAG
GGAGTGGAATGGAACCTATCACTGCATATTTAGATATAAGAATTCATACAGTATTGCAACCAAAGACGTC
ATTGTTCACCCGCTGCCTCTAAAGCTGAACATCATGGTTGATCCTTTGGAAGCTACTGTTTCATGCAGTG
GTTCCCATCACATCAAGTGCTGCATAGAGGAGGATGGAGACTACAAAGTTACTTTCCATACGGGTTCCTC
ATCCCTTCCTGCTGCAAAAGAAGTTAACAAAAAACAAGTGTGCTACAAACACAATTTCAATGCAAGCTCA
GTTTCCTGGTGTTCAAAAACTGTTGATGTGTGTTGTCACTTTACCAATGCTGCTAATAATTCAGTCTGGA
GCCCATCTATGAAGCTGAATCTGGTTCCTGGGGAAAACATCACATGCCAGGATCCCGTAATAGGTGTCGG
AGAGCCGGGGAAAGTCATCCAGAAGCTATGCCGGTTCTCAAACGTTCCCAGCAGCCCTGAGAGTCCCATT
GGCGGGACCATCACTTACAAATGTGTAGGCTCCCAGTGGGAGGAGAAGAGAAATGACTGCATCTCTGCCC
CAATAAACAGTCTGCTCCAGATGGCTAAGGCTTTGATCAAGAGCCCCTCTCAGGATGAGATGCTCCCTAC
ATACCTGAAGGATCTTTCTATTAGCATAGACAAAGCGGAACATGAAATCAGCTCTTCTCCTGGGAGTCTG
GGAGCCATTATTAACATCCTTGATCTGCTCTCAACAGTTCCAACCCAAGTAAATTCAGAAATGATGACGC
ACGTGCTCTCTACGGTTAATGTCATCCTTGGCAAGCCCGTCTTGAACACCTGGAAGGTTTTACAACAGCA
ATGGACCAATCAGAGTTCACAGCTACTACATTCAGTGGAAAGATTTTCCCAAGCATTACAGTCGGGAGAT
AGCCCTCCTTTGTCCTTCTCCCAAACTAATGTGCAGATGAGCAGCATGGTAATCAAGTCCAGCCACCCAG
AAACCTATCAACAGAGGTTTGTTTTCCCATACTTTGACCTCTGGGGCAATGTGGTCATTGACAAGAGCTA
TCTAGAAAACTTGCAGTCGGATTCGTCTATTGTCACCATGGCTTTCCCAACTCTCCAAGCCATCCTTGCC
CAGGATATCCAGGAAAATAACTTTGCAGAGAGCTTAGTGATGACAACCACTGTCAGCCACAATACAACTA
TGCCATTCAGGATTTCAATGACTTTTAAGAACAATAGCCCTTCAGGCGGCGAAACGAAGTGTGTCTTCTG
GAACTTCAGGCTTGCCAACAACACAGGGGGGTGGGACAGCAGTGGGTGCTATGTAGAAGAAGGTGATGGG
GACAATGTCACCTGTATCTGTGACCACCTAACATCATTCTCCATCCTCATGTCCCCTGACTCCCCAGATC
CTAGTTCTCTCCTGGGAATACTCCTGGATATTATTTCTTATGTTGGGGTGGGCTTTTCCATCTTGAGCTT
GGCAGCCTGTCTAGTTGTGGAAGCTGTGGTGTGGAAATCGGTGACCAAGAACCGGACTTCTTATATGCGC
CACACCTGCATAGTGAATATCGCTGCCTCCCTTCTGGTCGCCAACACCTGGTTCATTGTGGTCGCTGCCA
TCCAGGACAATCGCTACATACTCTGCAAGACAGCCTGTGTGGCTGCCACCTTCTTCATCCACTTCTTCTA
CCTCAGCGTCTTCTTCTGGATGCTGACACTGGGCCTCATGCTGTTCTATCGCCTGGTTTTCATTCTGCAT
GAAACAAGCAGGTCCACTCAGAAAGCCATTGCCTTCTGTCTTGGCTATGGCTGCCCACTTGCCATCTCGG
TCATCACGCTGGGAGCCACCCAGCCCCGGGAAGTCTATACGAGGAAGAATGTCTGTTGGCTCAACTGGGA
GGACACCAAGGCCCTGCTGGCTTTCGCCATCCCAGCACTGATCATTGTGGTGGTGAACATAACCATCACT
ATTGTGGTCATCACCAAGATCCTGAGGCCTTCCATTGGAGACAAGCCATGCAAGCAGGAGAAGAGCAGCC
TGTTTCAGATCAGCAAGAGCATTGGGGTCCTCACACCACTCTTGGGCCTCACTTGGGGTTTTGGTCTCAC
CACTGTGTTCCCAGGGACCAACCTTGTGTTCCATATCATATTTGCCATCCTCAATGTCTTCCAGGGATTA
TTCATTTTACTCTTTGGATGCCTCTGGGATCTGAAGGTACAGGAAGCTTTGCTGAATAAGTTTTCATTGT
CGAGATGGTCTTCACAGCACTCAAAGTCAACATCCCTGGGTTCATCCACACCTGTGTTTTCTATGAGTTC
TCCAATATCAAGGAGATTTAACAATTTGTTTGGTAAAACAGGAACGTATAATGTTTCCACCCCAGAAGCA
ACCAGCTCATCCCTGGAAAACTCATCCAGTGCTTCTTCGTTGCTCAACTAA

Translation (1346 aa):
MKSPRRTTLCLMFIVIYSSKAALNWNYESTIHPLSLHEHEPAGEEALRQKRAVATKSPTAEEYTVNIEIS
FENASFLDPIKAYLNSLSFPIHGNNTDQITDILSINVTTVCRPAGNEIWCSCETGYGWPRERCLHNLICQ
ERDVFLPGHHCSCLKELPPNGPFCLLQEDVTLNMRVRLNVGFQEDLMNTSSALYRSYKTDLETAFRKGYG
ILPGFKGVTVTGFKSGSVVVTYEVKTTPPSLELIHKANEQVVQSLNQTYKMDYNSFQAVTINESNFFVTP
EIIFEGDTVSLVCEKEVLSSNVSWRYEEQQLEIQNSSRFSIYTALFNNMTSVSKLTIHNITPGDAGEYVC
KLILDIFEYECKKKIDVMPIQILANEEMKVMCDNNPVSLNCCSQGNVNWSKVEWKQEGKINIPGTPETDI
DSSCSRYTLKADGTQCPSGSSGTTVIYTCEFISAYGARGSANIKVTFISVANLTITPDPISVSEGQNFSI
KCISDVSNYDEVYWNTSAGIKIYQRFYTTRRYLDGAESVLTVKTSTREWNGTYHCIFRYKNSYSIATKDV
IVHPLPLKLNIMVDPLEATVSCSGSHHIKCCIEEDGDYKVTFHTGSSSLPAAKEVNKKQVCYKHNFNASS
VSWCSKTVDVCCHFTNAANNSVWSPSMKLNLVPGENITCQDPVIGVGEPGKVIQKLCRFSNVPSSPESPI
GGTITYKCVGSQWEEKRNDCISAPINSLLQMAKALIKSPSQDEMLPTYLKDLSISIDKAEHEISSSPGSL
GAIINILDLLSTVPTQVNSEMMTHVLSTVNVILGKPVLNTWKVLQQQWTNQSSQLLHSVERFSQALQSGD
SPPLSFSQTNVQMSSMVIKSSHPETYQQRFVFPYFDLWGNVVIDKSYLENLQSDSSIVTMAFPTLQAILA
QDIQENNFAESLVMTTTVSHNTTMPFRISMTFKNNSPSGGETKCVFWNFRLANNTGGWDSSGCYVEEGDG
DNVTCICDHLTSFSILMSPDSPDPSSLLGILLDIISYVGVGFSILSLAACLVVEAVVWKSVTKNRTSYMR
HTCIVNIAASLLVANTWFIVVAAIQDNRYILCKTACVAATFFIHFFYLSVFFWMLTLGLMLFYRLVFILH
ETSRSTQKAIAFCLGYGCPLAISVITLGATQPREVYTRKNVCWLNWEDTKALLAFAIPALIIVVVNITIT
IVVITKILRPSIGDKPCKQEKSSLFQISKSIGVLTPLLGLTWGFGLTTVFPGTNLVFHIIFAILNVFQGL
FILLFGCLWDLKVQEALLNKFSLSRWSSQHSKSTSLGSSTPVFSMSSPISRRFNNLFGKTGTYNVSTPEA
TSSSLENSSSASSLLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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