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Report for CCDS49111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49111.1 Public Mus musculus 12 Isca2 23 108 98 CCDS HistoryNCBI Gene:74316Re-query CCDS DB by CCDS ID:49111.1Re-query CCDS DB by GeneID:74316See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021667.6 ENSMUSP00000021667.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021667.6Link to Ensembl Protein Viewer:ENSMUSP00000021667.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021667Re-query CCDS DB by Protein ID:ENSMUSP00000021667
Original member Current member NCBI NM_028863.1 NP_083139.1 Accepted alive Link to Nucleotide Sequence:NM_028863.1Link to Protein Sequence:NP_083139.1Re-query CCDS DB by Nucleotide ID:NM_028863Re-query CCDS DB by Protein ID:NP_083139Link to BLAST:NP_083139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083139.1 154 Q9DCB8 154 100% 0 0

Chromosomal Locations for CCDS 49111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84773301 84773371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84773575 84773677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84773793 84773908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84774543 84774717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGGCCTCCAGGGCCTTGTCCCTAACTGCCGAGGCGGTCAGGGCTGTCATTCCTAGGCGCTCGGGAA
GGCTCCTCGCCGTCTTTCCCAGGCTTTTGACCCGCTGGGAAACAACATCTTCCATTCCAGAGGCTGGCGA
GGGACAGATCCGCCTCACAGACAGCTGCGTCCAGAGGCTTCTGGAAATCACCGAAGGGTCAGAATTCCTC
AGGCTGCAAGTAGAGGGAGGTGGATGCTCCGGATTCCAATACAAATTTTCACTGGATACAGTTATTAACC
CCGACGACAGGGTATTTGAACAGGGTGGGGCAAGAGTGGTGGTTGACTCTGATAGCTTGGCCTTCGTTAA
GGGAGCCCAGGTGGACTTCAGCCAAGAACTGATCCGAAGCTCATTCCAAGTGTTGAATAACCCTCAAGCC
CAGCAAGGCTGCTCCTGTGGGTCATCCTTCTCTGTCAAAGTCTGA

Translation (154 aa):
MAASRALSLTAEAVRAVIPRRSGRLLAVFPRLLTRWETTSSIPEAGEGQIRLTDSCVQRLLEITEGSEFL
RLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQA
QQGCSCGSSFSVKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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