NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4908.1 Public Homo sapiens 6 SLC29A1 24 110 108 CCDS HistoryNCBI Gene:2030Re-query CCDS DB by CCDS ID:4908.1Re-query CCDS DB by GeneID:2030See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4908.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371708.1 ENSP00000360773.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371708.1Link to Ensembl Protein Viewer:ENSP00000360773.1Re-query CCDS DB by Nucleotide ID:ENST00000371708Re-query CCDS DB by Protein ID:ENSP00000360773
Original member Current member EBI ENST00000371713.6 ENSP00000360778.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371713.6Link to Ensembl Protein Viewer:ENSP00000360778.1Re-query CCDS DB by Nucleotide ID:ENST00000371713Re-query CCDS DB by Protein ID:ENSP00000360778
Original member Current member EBI ENST00000371724.6 ENSP00000360789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371724.6Link to Ensembl Protein Viewer:ENSP00000360789.1Re-query CCDS DB by Nucleotide ID:ENST00000371724Re-query CCDS DB by Protein ID:ENSP00000360789
Original member Current member EBI ENST00000371755.9 ENSP00000360820.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371755.9Link to Ensembl Protein Viewer:ENSP00000360820.3Re-query CCDS DB by Nucleotide ID:ENST00000371755Re-query CCDS DB by Protein ID:ENSP00000360820
Original member Current member EBI ENST00000393844.7 ENSP00000377427.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393844.7Link to Ensembl Protein Viewer:ENSP00000377427.1Re-query CCDS DB by Nucleotide ID:ENST00000393844Re-query CCDS DB by Protein ID:ENSP00000377427
Original member Current member EBI ENST00000651428.1 ENSP00000498610.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651428.1Link to Ensembl Protein Viewer:ENSP00000498610.1Re-query CCDS DB by Nucleotide ID:ENST00000651428Re-query CCDS DB by Protein ID:ENSP00000498610
Original member Current member EBI ENST00000652680.1 ENSP00000498747.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652680.1Link to Ensembl Protein Viewer:ENSP00000498747.1Re-query CCDS DB by Nucleotide ID:ENST00000652680Re-query CCDS DB by Protein ID:ENSP00000498747
Original member Current member EBI ENST00000652453.1 ENSP00000499107.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652453.1Link to Ensembl Protein Viewer:ENSP00000499107.1Re-query CCDS DB by Nucleotide ID:ENST00000652453Re-query CCDS DB by Protein ID:ENSP00000499107
Original member Current member NCBI NM_001078175.3 NP_001071643.1 Accepted alive Link to Nucleotide Sequence:NM_001078175.3Link to Protein Sequence:NP_001071643.1Re-query CCDS DB by Nucleotide ID:NM_001078175Re-query CCDS DB by Protein ID:NP_001071643Link to BLAST:NP_001071643.1
Original member Current member NCBI NM_001078177.2 NP_001071645.1 Accepted alive Link to Nucleotide Sequence:NM_001078177.2Link to Protein Sequence:NP_001071645.1Re-query CCDS DB by Nucleotide ID:NM_001078177Re-query CCDS DB by Protein ID:NP_001071645Link to BLAST:NP_001071645.1
Original member Current member NCBI NM_001372327.1 NP_001359256.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372327.1Link to Protein Sequence:NP_001359256.1Re-query CCDS DB by Nucleotide ID:NM_001372327Re-query CCDS DB by Protein ID:NP_001359256Link to BLAST:NP_001359256.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071643.1 456 Q99808-1 456 100% 0 0
NP_001071645.1 456 Q99808-1 456 100% 0 0
NP_001359256.1 456 Q99808-1 456 100% 0 0

Chromosomal Locations for CCDS 4908.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44227314 44227342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44229390 44229471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44229589 44229791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44229907 44230046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44230347 44230481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44230568 44230665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44230811 44230889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44231364 44231461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44231998 44232106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44232343 44232428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44232807 44233006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44233417 44233528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGACAACCAGTCACCAGCCTCAGGACAGATACAAAGCTGTCTGGCTTATCTTCTTCATGCTGGGTCTGG
GAACGCTGCTCCCGTGGAATTTTTTCATGACGGCCACTCAGTATTTCACAAACCGCCTGGACATGTCCCA
GAATGTGTCCTTGGTCACTGCTGAACTGAGCAAGGACGCCCAGGCGTCAGCCGCCCCTGCAGCACCCTTG
CCTGAGCGGAACTCTCTCAGTGCCATCTTCAACAATGTCATGACCCTATGTGCCATGCTGCCCCTGCTGT
TATTCACCTACCTCAACTCCTTCCTGCATCAGAGGATCCCCCAGTCCGTACGGATCCTGGGCAGCCTGGT
GGCCATCCTGCTGGTGTTTCTGATCACTGCCATCCTGGTGAAGGTGCAGCTGGATGCTCTGCCCTTCTTT
GTCATCACCATGATCAAGATCGTGCTCATTAATTCATTTGGTGCCATCCTGCAGGGCAGCCTGTTTGGTC
TGGCTGGCCTTCTGCCTGCCAGCTACACGGCCCCCATCATGAGTGGCCAGGGCCTAGCAGGCTTCTTTGC
CTCCGTGGCCATGATCTGCGCTATTGCCAGTGGCTCGGAGCTATCAGAAAGTGCCTTCGGCTACTTTATC
ACAGCCTGTGCTGTTATCATTTTGACCATCATCTGTTACCTGGGCCTGCCCCGCCTGGAATTCTACCGCT
ACTACCAGCAGCTCAAGCTTGAAGGACCCGGGGAGCAGGAGACCAAGTTGGACCTCATTAGCAAAGGAGA
GGAGCCAAGAGCAGGCAAAGAGGAATCTGGAGTTTCAGTCTCCAACTCTCAGCCCACCAATGAAAGCCAC
TCTATCAAAGCCATCCTGAAAAATATCTCAGTCCTGGCTTTCTCTGTCTGCTTCATCTTCACTATCACCA
TTGGGATGTTTCCAGCCGTGACTGTTGAGGTCAAGTCCAGCATCGCAGGCAGCAGCACCTGGGAACGTTA
CTTCATTCCTGTGTCCTGTTTCTTGACTTTCAATATCTTTGACTGGTTGGGCCGGAGCCTCACAGCTGTA
TTCATGTGGCCTGGGAAGGACAGCCGCTGGCTGCCAAGCCTGGTGCTGGCCCGGCTGGTGTTTGTGCCAC
TGCTGCTGCTGTGCAACATTAAGCCCCGCCGCTACCTGACTGTGGTCTTCGAGCACGATGCCTGGTTCAT
CTTCTTCATGGCTGCCTTTGCCTTCTCCAACGGCTACCTCGCCAGCCTCTGCATGTGCTTCGGGCCCAAG
AAAGTGAAGCCAGCTGAGGCAGAGACCGCAGGAGCCATCATGGCCTTCTTCCTGTGTCTGGGTCTGGCAC
TGGGGGCTGTTTTCTCCTTCCTGTTCCGGGCAATTGTGTGA

Translation (456 aa):
MTTSHQPQDRYKAVWLIFFMLGLGTLLPWNFFMTATQYFTNRLDMSQNVSLVTAELSKDAQASAAPAAPL
PERNSLSAIFNNVMTLCAMLPLLLFTYLNSFLHQRIPQSVRILGSLVAILLVFLITAILVKVQLDALPFF
VITMIKIVLINSFGAILQGSLFGLAGLLPASYTAPIMSGQGLAGFFASVAMICAIASGSELSESAFGYFI
TACAVIILTIICYLGLPRLEFYRYYQQLKLEGPGEQETKLDLISKGEEPRAGKEESGVSVSNSQPTNESH
SIKAILKNISVLAFSVCFIFTITIGMFPAVTVEVKSSIAGSSTWERYFIPVSCFLTFNIFDWLGRSLTAV
FMWPGKDSRWLPSLVLARLVFVPLLLLCNIKPRRYLTVVFEHDAWFIFFMAAFAFSNGYLASLCMCFGPK
KVKPAEAETAGAIMAFFLCLGLALGAVFSFLFRAIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH