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Report for CCDS49073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49073.1 Public Mus musculus 12 Fscb 23 108 98 CCDS HistoryNCBI Gene:623046Re-query CCDS DB by CCDS ID:49073.1Re-query CCDS DB by GeneID:623046See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059833.7 ENSMUSP00000051554.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059833.7Link to Ensembl Protein Viewer:ENSMUSP00000051554.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059833Re-query CCDS DB by Protein ID:ENSMUSP00000051554
Original member Current member NCBI NM_001163271.1 NP_001156743.1 Accepted alive Link to Nucleotide Sequence:NM_001163271.1Link to Protein Sequence:NP_001156743.1Re-query CCDS DB by Nucleotide ID:NM_001163271Re-query CCDS DB by Protein ID:NP_001156743Link to BLAST:NP_001156743.1

Chromosomal Locations for CCDS 49073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 64471502 64474690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3189 nt):
ATGGAAGAATGTGAAGAACCTGAAGAGCCTATATCATTAGGAAGGCAGGAATATAGAAGGAGAAGACGAC
CCAGCCAACCAATGGTAGATAAGTCCCAGCAAACTGAAATAACAGAAAAAAGGAAAGCCATGGCTTCAGT
ACAACCTCCTGCCCCTAAAGCTACTCATAGTATTGGTAATATTCCTGGAAGTAAAGACAACTACTCTCGA
AAAGAATATGAGTCTCTTAGGCTGTCCTCTCAACTTCAGAAAACTTTGATGAAGAGAAAGCATGTCCAGG
ATATGACTGACAAATCTCTTCAGACAGAACCTATTGTGGAAGAAAAAGTGGAAGTTATATTCATTGATAA
AACACTTAAACTTGAAGAAAACACAGCTGGTGTTGGAGAAATAGCTCCTGAATTGCCACAGAGTATTCCA
GAAGTAGAGATTCCAACAAGCAGACCCACCAGTCATTTAATAGACAGATCTCAACAGACCAGCTGTACTG
GTGACTGGAGCCTGATATACATTTGCCCAAAAGAAAAAGTGGACAAAGAACAACAGACCTACTTTAGTGA
GTTAGAAATTATTATCAGGTCTATTCCAGGTAGCTCCATGACTAAGTCGAAGGAAGAAACAATTCCTATT
GCACAAGAAGATCCTTTGGTTGAAATAAATGGTTCTCTTGAAATAGAGGTACTATCACCTGAAGAACTTC
CTGATGTCATGATGTCTTTCACTGAAGGGGAGATTTCTGGTGAATTACAGGCTCTATCAAATGGTGAGGC
CACAGTTAAAGGAGAGCTCTTCTTGACAGAGGAGATCCCTATCCAAGCACCATCTCCAGCTGAAGAGACC
TCTGCAGCTGAGACAGCCACTACAACTGCAAAAGACGTTGTGGATATACAGGCTCCACCAGCTGATAAGC
TTTCTTCTGTAGAGGCTCCTGCTGATATTAGTCCTACATTAGTGCAAGGGGCTCTTTCAGACAAGCCTTC
TGATCAACAGTATCCTCAAGGTACTGAGATGGCTCCTTCAGAACTTCCTGTTGAAGATCTGGATCCATTC
TCAGAAGAGGTGCTTGAGAAAGTTCAAGCTTTAACAACTGACTCTATGCTTGAAGACTTGGGAATAGCAG
AGTCTACTATTGCTGAAGAGACATCTGGTAAAGTTCAACATCCTCTGTCTGAAGAGACTTCTAAAGAAGT
ACCTGCTGAAGTTCATTTTCCGATAGCTGCAGACTTTGAAGAAAGTGCTATTTTAATAAATGAGAAATTT
GCTACTGATGAGGTCTTTGAAGAATATAAGCCTCCAATAATTGAGGAAGTCTCTGCAGATAAGGCTACTG
CAGAAGTTCAGCCTCCATCAGCAGAGGATGCTTCTGAAGAAGTGGCTCCTTCAGAAGTTCTGCCTCCATC
AACTGAACAGGGAACTGTAGAAGACCTGACTGCAGAAGTTCTATCTACACCAACTGAGGAGGGCCCTACA
GAAGTTCCACCTCAACCAACTGAAGAGGGGCCTGCAGAAGTTCCACCTCCACTATCTGAAGAGGGGCCTG
CAGAAGTTCCACCTGCACCAGCTGAGGAGGCCCCTGCAGAAGTTCTGCCTCCACCAGCAGAGGAGGCCCC
TGCAGAAGTTCCACCTCCACTAACTGAAGAGGGGCCTGCAGAAGTTCCACCTACACTAACTGAAGAGGGG
CCTGCAGAAGTTCCACTTGCACCAGCTGAGGAGGTCCCTGCAGAAGTTCTACCTCCACCAGCAGAGGAGG
TCCCTGCAGAAGTTCCACCTCCACTAACTGAAGAGGGGCCTGCAGAAGTTCCACCTCCATTAACTGAAGA
GGGCCCTGAAGAAGTTCCACCTTTACCAGCTGAAGAGGCCCCTACAAAAGTGCCACCTTCACCAGCTGAG
AAGGGCTCTGCTGAAGTTTCTCCTCCACAAACTGAAGAGGGGCCTGCAGAGGTTCCACCTCCACCAGCTG
AGGAGTTCCCTACAGAAGTACCATCTTCATCAGCTGAGGAGGGCTCTTCTGAAGTTCCACTTCCACCAAC
TGCAGAGAGACCTGAAGAAGCTCCACCTCCAGCAACTGAGGAGGCCCCTGTAGAAGTTCTACCTCCAGCA
ACTGAGGAGGCCCCTGTAGAAGTTCAATCTCCAGCAGCTGAAGAGGGCCTTGCAGAAGTCCCACCTCCAC
CAACTGAGGAGAGCCCTACACATGATGTTCCCACAGAAGTTCAGGTTCCACAAGCTAAGGAAAGTCCTGG
ACAGGTCCTACCTTTATCAGGTGAGTCCACTGCTGAAGAAGCCTCTGCACAAGTTCAGCCTCCATCCTTT
GAGAAGGCTCCTTTAGAAAGTCTTCCTCTAGAAGAAGTTGAGAAGATCCATTTAGATAATTTACCATTTG
AAGTGCAACCTCTGCCAACTGAGGACATTGCAATAGGTGTACCAGCTGAATCTCAGGCTCTTCCAGCTGA
TGAAAATCCTGCAAGAGAGGACACTGTTGAAACACAGCCTTCATCATTTGAGGGTGCTCCAATAGCAGAA
AACCCTATTGAAGCTCCACTTCCAGCATCTGAGGCAGATACTGGAAGAGAGGATTCTGCTGTTCATCCTT
CGTCATTAGCTCCTACAGACGAGGCTCCTGCAGAAATTCAGATTCTACAAACTGACGATATTCCTACAGA
AATGTCACCAGTTGAAAATCAGCCTCTACCAGCTGAGGAAGGCTTTCCCGAAGTGGTCTCAGAAGAAGAG
GCCACTGCAGCTGAAGTTAGGTTTCCTTTATCTGAGGGGGCTCCTGCACAAGAAGCCACTGTGGAAGCAC
AATTAACATCGGTTGAAGAGAGCCCTAAAAGGGCTTCTGTTGATGTCCAGCCTTTATCACCTGAGACCCC
TGTAGAAGAGTCTCCTGGTGTTGATCTGCCTTTAAAAACTAACGAGGTTACTATGCAAGAGTTTCGTGTG
GAAAAGATGCCTGCTGAAGATCCACTTCCACCTTCAGAACAAACCCCTGCAGATCAGGTTCTACTAAAAG
AACATCGATTGTCCCAGGTAGCAGACATCTCAGAGAAAGAATTAGAGTCTACTACTTTGACAAGTGATAA
AATGTCTGAAGGAATAGATTCGGTTCCTGAAGATGTGTCTGGAACCAAGGATGATCAGATCTCCACTTTC
AAAATAGAAGGTACCATTAAAATAGAGTTAAAGAACTGA

Translation (1062 aa):
MEECEEPEEPISLGRQEYRRRRRPSQPMVDKSQQTEITEKRKAMASVQPPAPKATHSIGNIPGSKDNYSR
KEYESLRLSSQLQKTLMKRKHVQDMTDKSLQTEPIVEEKVEVIFIDKTLKLEENTAGVGEIAPELPQSIP
EVEIPTSRPTSHLIDRSQQTSCTGDWSLIYICPKEKVDKEQQTYFSELEIIIRSIPGSSMTKSKEETIPI
AQEDPLVEINGSLEIEVLSPEELPDVMMSFTEGEISGELQALSNGEATVKGELFLTEEIPIQAPSPAEET
SAAETATTTAKDVVDIQAPPADKLSSVEAPADISPTLVQGALSDKPSDQQYPQGTEMAPSELPVEDLDPF
SEEVLEKVQALTTDSMLEDLGIAESTIAEETSGKVQHPLSEETSKEVPAEVHFPIAADFEESAILINEKF
ATDEVFEEYKPPIIEEVSADKATAEVQPPSAEDASEEVAPSEVLPPSTEQGTVEDLTAEVLSTPTEEGPT
EVPPQPTEEGPAEVPPPLSEEGPAEVPPAPAEEAPAEVLPPPAEEAPAEVPPPLTEEGPAEVPPTLTEEG
PAEVPLAPAEEVPAEVLPPPAEEVPAEVPPPLTEEGPAEVPPPLTEEGPEEVPPLPAEEAPTKVPPSPAE
KGSAEVSPPQTEEGPAEVPPPPAEEFPTEVPSSSAEEGSSEVPLPPTAERPEEAPPPATEEAPVEVLPPA
TEEAPVEVQSPAAEEGLAEVPPPPTEESPTHDVPTEVQVPQAKESPGQVLPLSGESTAEEASAQVQPPSF
EKAPLESLPLEEVEKIHLDNLPFEVQPLPTEDIAIGVPAESQALPADENPAREDTVETQPSSFEGAPIAE
NPIEAPLPASEADTGREDSAVHPSSLAPTDEAPAEIQILQTDDIPTEMSPVENQPLPAEEGFPEVVSEEE
ATAAEVRFPLSEGAPAQEATVEAQLTSVEESPKRASVDVQPLSPETPVEESPGVDLPLKTNEVTMQEFRV
EKMPAEDPLPPSEQTPADQVLLKEHRLSQVADISEKELESTTLTSDKMSEGIDSVPEDVSGTKDDQISTF
KIEGTIKIELKN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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