NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49051.1 Public Mus musculus 12 Crppa 23 108 98 CCDS HistoryNCBI Gene:75847Re-query CCDS DB by CCDS ID:49051.1Re-query CCDS DB by GeneID:75847See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062041.5 ENSMUSP00000061646.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062041.5Link to Ensembl Protein Viewer:ENSMUSP00000061646.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062041Re-query CCDS DB by Protein ID:ENSMUSP00000061646
Original member Current member NCBI NM_178629.6 NP_848744.2 Accepted alive Link to Nucleotide Sequence:NM_178629.6Link to Protein Sequence:NP_848744.2Re-query CCDS DB by Nucleotide ID:NM_178629Re-query CCDS DB by Protein ID:NP_848744Link to BLAST:NP_848744.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848744.2 447 Q5RJG7-1 447 100% 0 0

Chromosomal Locations for CCDS 49051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 36381774 36382024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36390346 36390622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36426289 36426438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36473102 36473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36476700 36476745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36501978 36502072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521433 36521522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36521959 36522051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36547829 36547960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 36688249 36688353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGAGCCTGGGCCGTGCAGCAGGCCCGCTGAGCCTGGGCATTGCGTGAGCGGCCCCGCGGGCGCGGGCT
CAGCGTTCCCGGAGTCCCCGTTGTCCGTCGCTGGGGCGGAGCCCGGGAACCGCCCTGGAACCGTGGCCGC
CGTGCTGCCGGCTGGGGGTTGCGGGGAAAGGATGGGCGTCCGCACCCCGAAGCAGTTCTGCCGGGTTCTG
GAAAGGCCGCTCATCAGCTACACTTTGCAGGCTATGGAGAGAGTATGCTGGATAAAGGACATTGTTGTGA
CAGTGACAGGGGAGAACATGGAAGCAATGAGAAGTATCATCCAGAGGTATGGGCATAAGCGCATCTCACT
AGCTGAGGCTGGAGCCACGCGCCACAGATCAATTTTCAATGGACTGAAAGCCCTGGCAGAAGATCAGCCA
GACTGTAAACTCACTAAGCCAGAAGTGGTGATTATCCATGACGCCGTGAGACCTTTTGTTGAGGAAGATA
TCCTCCTGAGAGTTGTCTTAGCAGCTAAGGAACATGGGGCAGCAGGAGCAATTCGACCTCTGGTGTCCAC
TGTCATCAGTCCCTCTGCTGATGGTCACTTAGACCACTCACTGGACCGTGCCAAGCATAGGGCAAGCGAA
ATGCCCCAGGCTTTTCTCTTTGATGTCATCTATGAAGCGTATCAGCAGTGTAGTGATTTTGACTTGGAAT
TTGGAACAGAGTGCTTGCAGTTGGCTCTAAAATACTGTCACAGGAAAGCAAAACTTGTAGAAGGGCCCCC
TGCCCTCTGGAAGGTGACCTACAAACAAGACCTGTGTGCAGCTGAAGCCATGATTAAAGAGAAAATTTCA
CAAGAGATTTGTGTGGTCATGAACACAAAAGATGAAGAATCTGTAGGACATCTTCTTGAGGAAGCGCTAA
GAAAGGAACTAAATTGTATGAAAATCACATCTACAGTTATGGATCACATAGGCGGAGACATTAGGAACTT
CATAGAGCAATGTTACAGTTTCATCTGTGTGAATGTTGTGTCCCCTGATAGTCAAGAAACCAGGAAGTTA
CTGCGTATCCTCGAAGAGAGCAGCCTTCCTCTTCTGTATCCTGTAGTTGTTGTTTTGGTACACTGCTTTG
ACTTCACGTCAGTGCCACTCGCTCAGAAGATGGAAAGCCTGGTGTGGATTAGGGGGTTAGCAAAGGAAGT
GAAAGAAAGGAATATTCTCCTAAGTGGACTCCTCCTAAACTACTCACAGGATGAGCAGAAGCTACAAGAG
AGTTTAGGACAAAGTGCAGCCATCATAGCTGCCTTAGTTAAGGAAAGAAATTCTGCACTTGTTGGGCAGC
TCCTGGTGGCATGA

Translation (447 aa):
MEPGPCSRPAEPGHCVSGPAGAGSAFPESPLSVAGAEPGNRPGTVAAVLPAGGCGERMGVRTPKQFCRVL
ERPLISYTLQAMERVCWIKDIVVTVTGENMEAMRSIIQRYGHKRISLAEAGATRHRSIFNGLKALAEDQP
DCKLTKPEVVIIHDAVRPFVEEDILLRVVLAAKEHGAAGAIRPLVSTVISPSADGHLDHSLDRAKHRASE
MPQAFLFDVIYEAYQQCSDFDLEFGTECLQLALKYCHRKAKLVEGPPALWKVTYKQDLCAAEAMIKEKIS
QEICVVMNTKDEESVGHLLEEALRKELNCMKITSTVMDHIGGDIRNFIEQCYSFICVNVVSPDSQETRKL
LRILEESSLPLLYPVVVVLVHCFDFTSVPLAQKMESLVWIRGLAKEVKERNILLSGLLLNYSQDEQKLQE
SLGQSAAIIAALVKERNSALVGQLLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH