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Report for CCDS48990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48990.1 Public Mus musculus 11 Septin9 23 108 98 CCDS HistoryNCBI Gene:53860Re-query CCDS DB by CCDS ID:48990.1Re-query CCDS DB by GeneID:53860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093907.10 ENSMUSP00000091435.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093907.10Link to Ensembl Protein Viewer:ENSMUSP00000091435.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093907Re-query CCDS DB by Protein ID:ENSMUSP00000091435
Original member Current member NCBI NM_001113486.1 NP_001106958.1 Accepted alive Link to Nucleotide Sequence:NM_001113486.1Link to Protein Sequence:NP_001106958.1Re-query CCDS DB by Nucleotide ID:NM_001113486Re-query CCDS DB by Protein ID:NP_001106958Link to BLAST:NP_001106958.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106958.1 583 Q80UG5-1 583 100% 0 0

Chromosomal Locations for CCDS 48990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117199755 117199773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117218875 117218931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117290398 117291036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117351429 117351620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117352149 117352277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117352607 117352688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117353088 117353225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117354810 117354927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117356335 117356430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117356613 117356709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117359419 117359470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117360423 117360555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGAAGAAGTCCTACTCAGGAGTCACACGGACCTCCAGCGGTCGCCTCCGGAGGCTTGCGGATCCCACTG
GCCCAGCCTTAAAGAGATCGTTTGAAGTCGAGGAGATTGAGCCGCCCAACTCCACGCCACCCCGGAGGGT
CCAGACCCCTCTGCTCCGCGCCACGGTGGCCAGCTCCAGCCAGAAATTCCAGGACCTGGGGGTGAAGAAC
TCAGAGCCCGCTGCCCGCCTTGTAGACTCCCTGAGCCAGCGCTCCCCCAAGCCTTCCCTGCGGAGGGTGG
AGCTGGCGGGAGCCAAGGCGCCTGAGCCCATGTCTCGACGCACAGAGATCTCCATCGACATCTCCTCCAA
GCAGGTGGAGAGCACGGCCTCCGCTGCCGGGCCCTCACGGTTCGGCCTTAAGAGGGCTGAAGTCCTGGGC
CACAAGACCCCAGAGCCTGTCCCTCGGAGGACGGAGATCACCATTGTCAAGCCTCAGGAGTCAGTGCTCC
GCAGGGTGGAGACCCCTGCCTCCAAGATTCCCGAGGGCTCTGCCGTGCCTGCCACAGATGCAGCCCCCAA
GAGGGTAGAGATCCAGGTGCCCAAGCCAGCTGAGGCACCCAACTGTCCGCTCCCGTCCCAGACCCTGGAG
AACTCCGAGGCCCCGATGTCTCAACTGCAGAGCAGGCTGGAGCCCAGGCCTTCCGTGGCTGAGGTCCCAT
ATCGGAACCAGGAAGACTCCGAGGTGACTCCCAGCTGTGTTGGCGACATGGCTGACAACCCTAGAGATGC
CATGCTCAAGCAGGCCCCCGCGTCACGGAACGAAAAGGCCCCCATGGAGTTCGGCTATGTGGGGATCGAC
TCCATCCTGGAGCAGATGCGCAGGAAGGCTATGAAACAGGGCTTCGAGTTTAACATCATGGTGGTTGGGC
AGAGCGGCCTCGGGAAGTCCACTTTAATCAATACCCTCTTCAAGTCCAAAATCAGCCGGAAGTCGGTGCA
GCCCACCTCGGAGGAACGCATCCCCAAGACGATCGAAATCAAGTCGATCACCCACGATATTGAAGAGAAG
GGGGTTCGAATGAAGCTGACAGTGATTGACACGCCGGGCTTCGGAGACCACATCAACAATGAGAACTGCT
GGCAGCCCATTATGAAGTTCATCAATGACCAATATGAGAAGTACCTGCAGGAGGAAGTCAACATCAACCG
GAAGAAGCGCATTCCCGACACCCGTGTCCACTGCTGCCTCTACTTCATCCCAGCCACCGGCCACTCGCTC
AGGCCCCTGGACATTGAATTCATGAAGCGCCTAAGCAAAGTGGTGAACATTGTCCCAGTCATCGCCAAGG
CTGACACGCTGACCCTGGAGGAGAGGGTCTACTTCAAACAGCGGATCACTGCAGACCTGCTGTCCAACGG
CATTGACGTGTACCCGCAGAAGGAGTTTGATGAGGACGCAGAAGACCGGCTGGTGAACGAAAAGTTCCGG
GAGATGATCCCATTTGCTGTGGTGGGCAGCGACCATGAGTATCAAGTCAATGGCAAGAGGATTCTGGGAA
GGAAGACCAAGTGGGGCACTATCGAAGTTGAGAATACCACTCACTGTGAATTTGCTTACCTGCGGGATCT
CCTTATCAGGACGCACATGCAAAACATCAAAGACATCACCAGCAACATCCACTTCGAAGCCTACCGAGTG
AAACGCCTCAACGAGGGCAACAGCGCCATGGCCAACGGGATCGAGAAGGAGCCGGAAGCCCAGGAGATGT
AG

Translation (583 aa):
MKKSYSGVTRTSSGRLRRLADPTGPALKRSFEVEEIEPPNSTPPRRVQTPLLRATVASSSQKFQDLGVKN
SEPAARLVDSLSQRSPKPSLRRVELAGAKAPEPMSRRTEISIDISSKQVESTASAAGPSRFGLKRAEVLG
HKTPEPVPRRTEITIVKPQESVLRRVETPASKIPEGSAVPATDAAPKRVEIQVPKPAEAPNCPLPSQTLE
NSEAPMSQLQSRLEPRPSVAEVPYRNQEDSEVTPSCVGDMADNPRDAMLKQAPASRNEKAPMEFGYVGID
SILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEK
GVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSL
RPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVYFKQRITADLLSNGIDVYPQKEFDEDAEDRLVNEKFR
EMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSNIHFEAYRV
KRLNEGNSAMANGIEKEPEAQEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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