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Report for CCDS48965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48965.1 Public Mus musculus 11 Nol11 23 108 98 CCDS HistoryNCBI Gene:68979Re-query CCDS DB by CCDS ID:48965.1Re-query CCDS DB by GeneID:68979See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106757.7 ENSMUSP00000102368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106757.7Link to Ensembl Protein Viewer:ENSMUSP00000102368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106757Re-query CCDS DB by Protein ID:ENSMUSP00000102368
Original member Current member NCBI NM_001161329.2 NP_001154801.1 Accepted alive Link to Nucleotide Sequence:NM_001161329.2Link to Protein Sequence:NP_001154801.1Re-query CCDS DB by Nucleotide ID:NM_001161329Re-query CCDS DB by Protein ID:NP_001154801Link to BLAST:NP_001154801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154801.1 703 Q8BJW5-2 703 100% 0 0

Chromosomal Locations for CCDS 48965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107167525 107167641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107168282 107168389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107171092 107171184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107171615 107171693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107173210 107173401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107173604 107173729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107175566 107175747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107176783 107176857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107178576 107178661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107178969 107179092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107180042 107180118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107180913 107181101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107181739 107181883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107183573 107183630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107184740 107184888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107186635 107186691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107186809 107186922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107189117 107189257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCAACCCTGGAAGAAGAATTCACGTTGTCTACTGGAGTCTTAGGCGCCGGGCCTGAGGGATTCCTAG
GTGTAGAGCAGACTGACAAAGCCGACCAGTTCCTAGTGACGGACAGCGGCAGGACCGTCGTCCTTTACAA
GGTTTCTGACCAGAAACCGTTGGGCAGCTGGTCGGTGAAGCAAGGTCAGAGTATAACATGCCCTGCTGTG
TGCAACTTTCAGACTGGAGAGTATATTATGGTACATGACCATAAGGTTTTGAGAATATGGAATAATGATG
ACGTAAACGTGGATAAAGTATTCAAAGCTACACTGTCAGCTGAAGTCCATAGAATCCACTCAGTACAAAG
AACAGAACCCTTGGTGCTGTTCCGAGGAGGCGCTGCTCGTGGGCTAGAGGCCTTGCTTGTAGAGCCCCAG
CAGAACATCGAATCTGTCATACCTGATGAGGAAGTGATCGTGTGGTCAGAGGTTTTCATGTTATTTAAGC
AACCAGTTTTAATTTTTATTACTGAAAATCATGGTCATTATTATGCTTATGTACGATTATGCAAATCACA
CAGCTTAAGCAAATACACACTCTTACTTGAAAAAGAAGAAAAATCTGTTAAACCAAATTTTACTGCACGT
GTGGATGGGAAATTCATCTCCCTGGTGTCGCTAAGCTCTGATGGGTGTATATATGAAACCTTGATACCAA
TATATTCAAGTGACACAGAACAAAACCAGAGGTTAGTTAGAGCATTGATGCTCAAGTCAGTTGTGTCTGG
CGGTGTTCGAAATGGTGTTGCCCTCACCATCCTGGATCAAGACCACATAGCTGTCCTGGGACCTCCACTT
TCAGCTTCTAAGGAGTGCCTCTCCATATGGAACATAAAGTTTCAAACATTACAGACGTCAAAAGAGCTGC
CACAAGGAACCAGTGGGCAGCTCTGGTATCATGGGGAAGTACTATTCATGCTACATGGAAAAAGTCTAAC
TGTGATTCCATACAAGTGTGAAGAATCGTCTCTAGCAGGCGCTCTTGGAAAACTCAAGCACACACAAGAG
TCAGGCACTCATTCTGTGCCCCACTTTGTAAACTGGGAAACATGTTCAGGATATGAACTTGGGTCCTCCG
GTGCAGAGCAGTCAAGAACTCTTAGGAGAAAAAAAGTTGAAACAAATTTACAGCCAGAAGTTCCAGGATT
CAAACAACTTTTATCAATAATAAAGAAAGATTCAGAAAAGCACATTGAAGTAGAACTCCGTAAGTTTTTG
GCGAAGTCAACACCTGCCTTTCATACTATAATTGGAGACTTAGTAGCAGGGCTTGTGGGAAGATGTAAAG
CCGAGCCATCGTTTTACCCCCGGAACTGTCTGACACAGCTCATCCAAACACACGTGCTTTCCTACAGCTT
ATGCCCTGACTTGATGGAGATTGCCCTAGAGCACACAGATGTGCAGATGTTACAGCTGTGTCTACAGCAG
TTCCCTGACATTCCTGAGTCCACCACCTGTGCTTGCTTAAAACTTTTCTTGAGTGATTCCACACAAGATG
AGAAAAAGGAAATGGAAGAGCAAATTGAAATTGTTCAGAATGGCTTTGGACCTGAAGATGGGAACTGCAG
TGAAGATAGTCAGCAGTTAAATGATAAGCCTGCAGACACAGCACACGAGCCCGGCTCCTTCCCTGTGACC
TCATGTCCTGTGGCACCAAAGCGAGCAGCTCTGCTAAATGCAGTCCTTCATTCCGCATACAGTGAGCCCT
TCCTCCTGCCGCACTTGAAGGACATCCCTGCGAAGCATGTCACGCTGTTTCTCCAGTATTTGTATTTCCT
CTATTTGAAGTGTACTGGCAGTGCTACCATGACTCTCCCTGGAGTGAACCCTCCAACCGTGAGCCAGATT
ATGGATTGGATATGCCTACTTCTAGATGCTAATTTTACTGTCCTATTAATGATACCAGAAGCAAAAAGAC
TTTTACTTATTCTTTACAATTTTGTGAAATCTCAGATCTCCATCTATTCCGAGCTCAACAAGATCGCAGT
CAGCTTCCGGGAGCTGCAGAGATTAAATCGGGAGAAGAGCAGTAGAGGACTGTACTCCATCGAAGTGCTG
GAACTCTTCTGA

Translation (703 aa):
MATLEEEFTLSTGVLGAGPEGFLGVEQTDKADQFLVTDSGRTVVLYKVSDQKPLGSWSVKQGQSITCPAV
CNFQTGEYIMVHDHKVLRIWNNDDVNVDKVFKATLSAEVHRIHSVQRTEPLVLFRGGAARGLEALLVEPQ
QNIESVIPDEEVIVWSEVFMLFKQPVLIFITENHGHYYAYVRLCKSHSLSKYTLLLEKEEKSVKPNFTAR
VDGKFISLVSLSSDGCIYETLIPIYSSDTEQNQRLVRALMLKSVVSGGVRNGVALTILDQDHIAVLGPPL
SASKECLSIWNIKFQTLQTSKELPQGTSGQLWYHGEVLFMLHGKSLTVIPYKCEESSLAGALGKLKHTQE
SGTHSVPHFVNWETCSGYELGSSGAEQSRTLRRKKVETNLQPEVPGFKQLLSIIKKDSEKHIEVELRKFL
AKSTPAFHTIIGDLVAGLVGRCKAEPSFYPRNCLTQLIQTHVLSYSLCPDLMEIALEHTDVQMLQLCLQQ
FPDIPESTTCACLKLFLSDSTQDEKKEMEEQIEIVQNGFGPEDGNCSEDSQQLNDKPADTAHEPGSFPVT
SCPVAPKRAALLNAVLHSAYSEPFLLPHLKDIPAKHVTLFLQYLYFLYLKCTGSATMTLPGVNPPTVSQI
MDWICLLLDANFTVLLMIPEAKRLLLILYNFVKSQISIYSELNKIAVSFRELQRLNREKSSRGLYSIEVL
ELF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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