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Report for CCDS48963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48963.1 Public Mus musculus 11 Cep95 23 108 98 CCDS HistoryNCBI Gene:320162Re-query CCDS DB by CCDS ID:48963.1Re-query CCDS DB by GeneID:320162See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103068.9 ENSMUSP00000099357.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103068.9Link to Ensembl Protein Viewer:ENSMUSP00000099357.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103068Re-query CCDS DB by Protein ID:ENSMUSP00000099357
Original member Current member NCBI NM_001166685.1 NP_001160157.1 Accepted alive Link to Nucleotide Sequence:NM_001166685.1Link to Protein Sequence:NP_001160157.1Re-query CCDS DB by Nucleotide ID:NM_001166685Re-query CCDS DB by Protein ID:NP_001160157Link to BLAST:NP_001160157.1

Chromosomal Locations for CCDS 48963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106789359 106789377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106790731 106790859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106792477 106792584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106796123 106796233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106800044 106800143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106801463 106801578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106806236 106806429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106809192 106809301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106809628 106809757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106811196 106811349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106812396 106812535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106813761 106813862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106814604 106814736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106815468 106815637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106815734 106815808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106816653 106816805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106817834 106817980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106818196 106818267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106818534 106818725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGCCAGCTCAGAGGCTGAATGGGTAACAATTGCCAATAACCTCCTTTTTAAATGTCACATACACCTGA
GGATACACGAACTTCAAGACTGTGATGCTAATGTTTTTATTGCCCTTTATCAATCCATTTTGGGAGAAAA
GGTACCAGACCTCATAGTTCTTCCCAGGAATCAAGAAGACGAGGCCCACAATGTCCAAGCGGTAATTGAT
TCACTCGCTTTGGATTACCTTCAGGTCAGCCTGTCTCACATAACAGGAGAAAACATAGTGAAAGGGGATA
ATGAATCTATCAGGAATCTCCTAGAAATATTTGATGGATTGCTGGATTATCTGACAGAACACATCAGTGA
ATCGTCTCCCAACAAAAGTGAAACTGAGCAGTATTCTAAAGATTCTCATGGAGAAGAAGCTGGGGAGGAC
CTAGAACGTACCGAGGAGGCGAAGTGGAGAAACGCTTCTTTTATGAGGTGTTCCTTCTCATCGGACACTT
TGGGCCCCACCTGGGATGAAGACGAAGCTGAGTCCACAGGTGAAATAATTAGGCTGGGAGACACTGCACA
TACCTTTTCCCAAAGAAGTAATGCATCAGAAACTCCTCCTATGAGCATGGTTCCAAGTGCCAGGAAGCTA
GGCGAGCCGATCCGAGCTGCCATTCCTTTACATCCTCCCTACCATCCTTCTGAGCCTAGAGCACCATGTC
CCATAGGCAAAGAATACCTCTGGTCAAGTCGCTACTTGTCTACGCCGACTTCTGGAGAGCACATGGCACC
TTCTGTGGAACCAGATGATGCTTTCTTAACTTCTACCTTATTTAAAGATGATGATCAGGAAACATATCTA
CCTAAACCTGAAGCCACCAGGACAAGGAAGCCTTCTAAAGGAGAAAGAGATGAAAACAGAGCTGCGATCC
CCTCAGAGCATCTGCCTTTCTCTCAGAAGGCCAGGAAGCCGTTAACAGAACAAGAACTGCACGCCATGTC
AGAGAAACTCTCTCAGCGGCTCTCTGAACTAGACTGGATGTTAAAAACTGCCCTGGGTGATCGAGGAACG
GGCGAAACTGATGGTAATGATGGTGATGGCGGAGGTGAGGAGGTGCGCAGTGGGAACGAGGAGATGCTCT
CGCAGCACAGTGACAGCGTCATGGAGTACGGACCAAAGAAGCCGAGGCCAGGATTTTCTACGTGCAGAAA
GGCACCTTACAGGTCCCATTCACTGTCGCCATCTTCAGTGAACAAACACAGACAATTAGAGAAAGAGAAA
AAAAGGCAGCACAAATCTAAAGGGACAGACTCATGCCATTTCCAAGCAAAGGCACTGACTGAAGCATTTG
AACGGGAACTAAGAAAACATAAAGTTCAAGAGAACGTTGGACTTCGAGGGATAAGGGAGGAGGAGGAAGA
GGAAGAGGAAACAGGGAAGTCATACAGAGAAGTCGTTCCTAAAGGAACTTCCAAACGGAGTCAGGTCCAG
AAGACTTACTCCAGAAAAACTGCAGCTCCAAGTCCAAAAGGAGATGGTCGCCTGAAGTCAAGCAAGGCGT
CTCCGATGAAAGTAAGTGAACACAGTCTGCTATCCCTGATGCTGGAACAGTTTCCATTTCTCTATGTTTC
TGACCCAACACTGACCAAAATGTGGAAGCAGCAGATGGCCCAGGTTGAACAACTCAAAAGGGAAGCGCAG
AGAGAGAACCGATCCAAGAAGAAACTCCAGGATGAAATAGAAGAAGCCCTGAGAAGGCATGACCTCCTCA
CTGCTCTTGTCAAGAAAGAATATGACCATAACAAGAGGCTGCAAGACTTCAGGGACCGAATTCAGAGACA
AAGGTTGACCCAATCAAAGATAAAAGAAAATCGTCATCAAAGTGTTCGTGCCCGGAAATATTATGATGAT
TACAGAGTTCAGTTACGTGCAAAAATGATGAAGATGAGAACCCGGGAAGAAATGATCTTTAAGAAACTGT
TTGAAGAAGGTTTACAAATTCAGAAACAAAGACTACGAGACCTAAGAAACTACGCCAAAGAGAAACGCAA
CGAAGAAAAGAGACAGCACCAGAATGAGCTGGACTCGATGGAGAACCACTATAAGGACCAGTTTTCATTG
CTAGCAGAAGCCATCTCACAGGAACGTCAAGAACTCAAAGTGAGACAGAAATTCCAGGCTCAGACATTAC
ATAAGGTGAAGAGGGAGCTGAGAGCTAAAATGGAGAAGGAGATTCAGCAACTGCAGCACATGATAACGCA
GAACGACGATGATGCTTTCTTCCGGGAGCTAGAAGCTGAGCGCTTCAAAGCTCGGCTGCAGTTGGCTTCC
TTCCAGTACAGTAAAAATCCTTTCCCAAGAGGCCAAACTTCATAG

Translation (784 aa):
MASSEAEWVTIANNLLFKCHIHLRIHELQDCDANVFIALYQSILGEKVPDLIVLPRNQEDEAHNVQAVID
SLALDYLQVSLSHITGENIVKGDNESIRNLLEIFDGLLDYLTEHISESSPNKSETEQYSKDSHGEEAGED
LERTEEAKWRNASFMRCSFSSDTLGPTWDEDEAESTGEIIRLGDTAHTFSQRSNASETPPMSMVPSARKL
GEPIRAAIPLHPPYHPSEPRAPCPIGKEYLWSSRYLSTPTSGEHMAPSVEPDDAFLTSTLFKDDDQETYL
PKPEATRTRKPSKGERDENRAAIPSEHLPFSQKARKPLTEQELHAMSEKLSQRLSELDWMLKTALGDRGT
GETDGNDGDGGGEEVRSGNEEMLSQHSDSVMEYGPKKPRPGFSTCRKAPYRSHSLSPSSVNKHRQLEKEK
KRQHKSKGTDSCHFQAKALTEAFERELRKHKVQENVGLRGIREEEEEEEETGKSYREVVPKGTSKRSQVQ
KTYSRKTAAPSPKGDGRLKSSKASPMKVSEHSLLSLMLEQFPFLYVSDPTLTKMWKQQMAQVEQLKREAQ
RENRSKKKLQDEIEEALRRHDLLTALVKKEYDHNKRLQDFRDRIQRQRLTQSKIKENRHQSVRARKYYDD
YRVQLRAKMMKMRTREEMIFKKLFEEGLQIQKQRLRDLRNYAKEKRNEEKRQHQNELDSMENHYKDQFSL
LAEAISQERQELKVRQKFQAQTLHKVKRELRAKMEKEIQQLQHMITQNDDDAFFRELEAERFKARLQLAS
FQYSKNPFPRGQTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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