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Report for CCDS48952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48952.1 Public Mus musculus 11 Lrrc37 23 108 98 CCDS HistoryNCBI Gene:380730Re-query CCDS DB by CCDS ID:48952.1Re-query CCDS DB by GeneID:380730See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167262.1 ENSMUSP00000129662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167262.1Link to Ensembl Protein Viewer:ENSMUSP00000129662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167262Re-query CCDS DB by Protein ID:ENSMUSP00000129662
Original member Current member NCBI NM_001033434.2 NP_001028606.2 Accepted alive Link to Nucleotide Sequence:NM_001033434.2Link to Protein Sequence:NP_001028606.2Re-query CCDS DB by Nucleotide ID:NM_001033434Re-query CCDS DB by Protein ID:NP_001028606Link to BLAST:NP_001028606.2

Chromosomal Locations for CCDS 48952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 103534622 103534691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103534770 103534873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103534948 103534978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103536564 103536610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103540836 103540940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103541767 103543514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103545758 103545876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103582621 103582695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103584824 103584895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103603197 103603277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103604512 103604583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103608882 103608953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103609919 103609990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 103612877 103614612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4404 nt):
ATGTCATTACAGCCTTTAGATCAGGAACTCACCATGTCTTCTCAGCCTCCTGGATATACTCACCACTCTC
CAAATGCAGCGAAGACTGAAAACCATACACCAGAAAATAATTTTTTTCCTTATGCAGAACCTCCCATGGG
AATGGTAGTTCAACCTCCAGATCTGTTTTTTCTCAAAAGTACAAAATCTAATCTTGTGCAGGAAACTCCA
AGTCTGATTACAAAATCACCTAAAGAGGTTGCAGCTCACACTCTAGAATATAAGAAGAGGTTGCCTCCAG
TCCCAGTTGAGGGTCAAGCGGAGTCTCCACCACCACCCAATATATCATTACAGCCTTTGGATCAGGAACT
CACCATATCTTCTCAACCTCCGGGTTGGACTCATCACCCTCCAAATCCAAAGGAGACTAAAAACTATACA
CCAGGAAAGATTTTTCTTCATTATGCAGATACTCCCCTGGGAATGATAGTTGAACCTCCAGATCTGTTTT
TTCTCAAAACTACAACATCTGAACCTGTGCAGGAGACTCCATCTCAGATCACAAAATTGCCTAAAGAGAT
TATAGCGCAAACTTTAGAATATAAAGAGGGCTTGCTTCCAGTTCCATTTGGGGGTGAAGATGATTCTACA
ACTCCACCCAATGTTTCATTACAGCCTTTGGATCAGGAAATCATCATATCTTTTCCTTCTCTTGGACAGG
CTCAGCAACCACCAAATGTGAAGGAGAGTAAAGAACATCAGCCCGAAGAGATTCTCTTTCACAATGCAGA
ACCTTCAATGGGAACAGTAGTTGATCTAGATCTGTTTTTTCCTAAAACTATGGAATCTAAACCTGTGCAG
GAGGCCCCAACTCAGATTACCAAATCACCTAAAGAGGGTGTAGTTCAAACTCTAGAATATAAAGAGCTAG
TGGTTTCATCTATAATTGAAGGTAATGTTAAGTATGTAACACCCAATGTTTCATATCGACCTTTAGACCT
AGGGCTCTCTGAATCCTCTGGCTCCACTACCGAGGTTTATCGTTCTACTACTTTGAATGAGACTACAGTT
CCTTCTTCAATGCATCTTCAAGTCCCAATGCCACATTTGCACTCAAATTTTTCTGTAACTCAACAACCTA
ATACAATGGCTAAACATTCTTCCATAATGGAGACTCCAGCTCATCCTTCAGAGATACCTGTGGAGACTGT
AGCCCAATCTGTAGAGTATTATCCAACAATAGTTTTAACTTCAGTTTATATTGAAACTCAACATTCAAAT
TTATCAGCTATAGAAACGGCACATTCTGAAGTTCCAACAACCACAGCTCCTTATCCACAGGCTATATATT
CTGAAGTCCCAACAACTACAGGTCTTTATTCAGAGGCTACACATTTTGGAGTCTCAACAACTACAGCTGC
TTCTCCAGAGATTACACATTCTAAAGCCCCAGAGACTACAGCTCTTACTCCGAAGTGGCCTGGTACAACA
AGTCTATCTCCAGATCAGGTTGAGAAACATTCAAGCCCTACAGTTCAAGTTTTGAAAATGGAATCTACCA
TAACTCCATATTCTGAAAATTCTAGTACAGAAAATGATTTAACTATAGAAAAAAGTGCCTACAATTACAC
CAAAATATGTGACTTCTGCGTGTGTGAAAATGAGACACTGTTGTGTGTTCATCTCAGCCCAAAATGGAGA
CTCCAACAAGTGCCTGTGCCAAGGCCCAACACCTACAATGACACTTTTGTTATCTTAAATTTCAAAGGAA
ATGATATTTCTTTCATTGACAAAAATGTATGGAAGGTATACCGTTGGACTGAGAAATTAATTCTCAGCGA
AAATCACCTGACTGAATTACATAAGGAGTCATTCGAAGGCCTGCTATCCCTCCAGGTTTTGGATTTATCC
TGCAATAAAATACGCTATATTGAAAGAGGGACATTTGAACCATTACCTTTTTTGAAGTATATGAACCTTG
GGTGCAATTTACTCACGGAACTGAGCTTTGGAACATTTCAAGCATGGCATGGGATGCAGTTTTTACAGCA
GTTAATTCTCAGCCGTAATCCTCTCGCAGTTGTTGAAGATCCCTACTTTTTTAAGTTGCCAGCGTTAAAA
TATCTGGACCTGGGGACCACACAGGTGCAACTGACAACGGTTGAGAGCATCCTCATAAAGACTCTGGAGC
TGGAACATCTGATCTTACCTAGCCACATGGCCTGCTGCCTCTGCAAATTTAAAGCTGATATTGAGGTTAT
CTGCAAGACAATCAAACTGCATTGTCATACCGGATGTCTGACAAACACCACACGTTGTCTTGAAGAAGCA
TCTATAAGGAACCCAGAAGGAGCATTTATGAAAGTGTTGCAGGGCCGGACGGGGAACACCAGCACTGAGC
TCATTATTGAGCCAGAAAGGGGCAATTCAGACAAGGATTATGCCAACTATTCCAGTTCCATGGATGAAAA
CATAGACCTTAATGATGAAAATGATATTATGAGTGCACTAAATTACATACTGCCATATTTCTCAGAGGGA
AATATGGAAGACATAATATCCTCAATGTTACCGTTCATTAAACTGCTGTTTTCTCAGGAACAAGATGCAA
GTAATTCCTTGGGATCTTTGCAGAAAGACCCAGAAAGGGTTCCTGTTACAAATGAATCTAAGACCAGTAA
TGTGACTTACAAAAATAAATTGAATAAACATTATTTTTTAGAAAATTTGTTAGACACAGACACTGATGAG
GTTCAAAAGGAAAAGAAACCTGGGAGGCACAATGCAAAATCTAAAAATGTAGGTCCCAAATTTAAACGAC
AAATATTTGAAAAGAGATGGGAACCTGCCCGGGCAGGGGAAGACAGTCTTGCAGAGATCGAGAAGGCAGA
GAGACAGCTCCACAGCATGAGCAGGGTCCCCAAGGGGACAGGAAGCATACAGAAAAGGCACTTCAAGGAT
GTGAGTGGCAAGAGCCTGTGGAGCAAGCAGAGCGTCCAGACCCCTGTGGAGAGCATCTCCAAGGACAGGC
AGCTCGGGAGCCCACCCTCAATGGAGCTGCAGCAGCTCGGCCTGGAGCAGAAGCCCAGGGAGTTAGTGGG
CTATTCCTTCCCCTCAGAGCCCTTGCTCCCAAAGGAGCACAGGGGAGAGCTCTCTTCTTCCCCAGATCTG
CCCCTGCTGGACAAGGCTCCCACTACAAACTCTCTACCTGACTTCATAGACAGACGGAAAGACTTGTCTT
ACACCATTTACGTTTTAGAAAGTGCAAATGCTAATGTGAAGAGAGCGAAGGGTTCTAACCCAAGTTTACA
ACCTGAAGCGAGGCATCGGAACCTTAGGAAGAAAAAATCTCATTTCCAGTTGATTGCAAAGAGGCCGGCA
GCATCCTCTGCAGTGAGGAGCCTGATAAGTTCCCCTGCACGAGGGGTCTTTTCATCTTTAGGAGACCTGA
GGTACCCAGAAAGGCCCTTTTCAGAATTATATGTTGCTCCAGAGCCTTCTACAAAAAAACCTCTTGAAGA
AAATCGGGCTGCAACAGATAATGTTGAAGAAAATATTCTTGAACAAATTGTCACTATGCCTGAAGAAACT
ACATCAAAAAATAAATCCGCTAAGAATCCTGCTGCAGATTCTGATATACCTATACCCAATATACCAGGCT
TAATTCCACCTGTTCTGCAAACCACCAAGCCACCGTTACACTTCATTTTTGGGTCTGACTCACCCAACAA
CTTGGAAGAATTTGCTTACCCATCGCTGATGACACCAGGAGAACAGTTTGAATCTCATCTCAACCAGCAG
CTGCGGGTGCTCATCCCCAACAACGATGTGAGAAGGCTCATCTCTCACGTTATCAGGACTTTGAAGATGG
ACTGCTCTGACAGTCAAGTGCAACTGTCCTGTGCCAAGCTCATCTCCAGAACAGGCCTCCTGATGAAGCT
CCTCAGCGAGCAGCAAGATTTCAAGCTGTCCAGGGCCGACTGGGATACAGACCAGTGGAAAACTGAGAAC
TACATCAACGAAAATACAGAAACCCAAAGCAAACTGAAGAGTCTGGGACGAAGTCAGTTTGGAAAAGAAG
TCTCAGAGTTCAGCTACAATAACAAAGTCACCTTGGCGATATCTGTGACCGTCGTAGTGATAGTTTTGAT
TATCATTTTCTGTCTCATTGAGATTTGTTCCCACAGAACAAAAAAGGGAGACAAAGAAAAGCACAAATGG
AGAAAGAAATACAAGGAAAGAAAGAATAAGGAAAAATATATCTGGATAAGGTTGCCACCTCGGCTTAGAA
ATATACTCAAACTCGACAAGAAATGTGGGCATGATTTACGGGCCAATACTCAGGATAAATTATGGGAGGT
CAAGAAAAGATCCTCGGTGAAATCGTCCGCAGAATCGAGTGAAGTAGCCGAAACCCCACGGTGA

Translation (1467 aa):
MSLQPLDQELTMSSQPPGYTHHSPNAAKTENHTPENNFFPYAEPPMGMVVQPPDLFFLKSTKSNLVQETP
SLITKSPKEVAAHTLEYKKRLPPVPVEGQAESPPPPNISLQPLDQELTISSQPPGWTHHPPNPKETKNYT
PGKIFLHYADTPLGMIVEPPDLFFLKTTTSEPVQETPSQITKLPKEIIAQTLEYKEGLLPVPFGGEDDST
TPPNVSLQPLDQEIIISFPSLGQAQQPPNVKESKEHQPEEILFHNAEPSMGTVVDLDLFFPKTMESKPVQ
EAPTQITKSPKEGVVQTLEYKELVVSSIIEGNVKYVTPNVSYRPLDLGLSESSGSTTEVYRSTTLNETTV
PSSMHLQVPMPHLHSNFSVTQQPNTMAKHSSIMETPAHPSEIPVETVAQSVEYYPTIVLTSVYIETQHSN
LSAIETAHSEVPTTTAPYPQAIYSEVPTTTGLYSEATHFGVSTTTAASPEITHSKAPETTALTPKWPGTT
SLSPDQVEKHSSPTVQVLKMESTITPYSENSSTENDLTIEKSAYNYTKICDFCVCENETLLCVHLSPKWR
LQQVPVPRPNTYNDTFVILNFKGNDISFIDKNVWKVYRWTEKLILSENHLTELHKESFEGLLSLQVLDLS
CNKIRYIERGTFEPLPFLKYMNLGCNLLTELSFGTFQAWHGMQFLQQLILSRNPLAVVEDPYFFKLPALK
YLDLGTTQVQLTTVESILIKTLELEHLILPSHMACCLCKFKADIEVICKTIKLHCHTGCLTNTTRCLEEA
SIRNPEGAFMKVLQGRTGNTSTELIIEPERGNSDKDYANYSSSMDENIDLNDENDIMSALNYILPYFSEG
NMEDIISSMLPFIKLLFSQEQDASNSLGSLQKDPERVPVTNESKTSNVTYKNKLNKHYFLENLLDTDTDE
VQKEKKPGRHNAKSKNVGPKFKRQIFEKRWEPARAGEDSLAEIEKAERQLHSMSRVPKGTGSIQKRHFKD
VSGKSLWSKQSVQTPVESISKDRQLGSPPSMELQQLGLEQKPRELVGYSFPSEPLLPKEHRGELSSSPDL
PLLDKAPTTNSLPDFIDRRKDLSYTIYVLESANANVKRAKGSNPSLQPEARHRNLRKKKSHFQLIAKRPA
ASSAVRSLISSPARGVFSSLGDLRYPERPFSELYVAPEPSTKKPLEENRAATDNVEENILEQIVTMPEET
TSKNKSAKNPAADSDIPIPNIPGLIPPVLQTTKPPLHFIFGSDSPNNLEEFAYPSLMTPGEQFESHLNQQ
LRVLIPNNDVRRLISHVIRTLKMDCSDSQVQLSCAKLISRTGLLMKLLSEQQDFKLSRADWDTDQWKTEN
YINENTETQSKLKSLGRSQFGKEVSEFSYNNKVTLAISVTVVVIVLIIIFCLIEICSHRTKKGDKEKHKW
RKKYKERKNKEKYIWIRLPPRLRNILKLDKKCGHDLRANTQDKLWEVKKRSSVKSSAESSEVAETPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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