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Report for CCDS48844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48844.1 Public Mus musculus 11 Or1e1c 23 108 98 CCDS HistoryNCBI Gene:258924Re-query CCDS DB by CCDS ID:48844.1Re-query CCDS DB by GeneID:258924See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078952.8 ENSMUSP00000077977.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078952.8Link to Ensembl Protein Viewer:ENSMUSP00000077977.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078952Re-query CCDS DB by Protein ID:ENSMUSP00000077977
Original member Current member NCBI NM_001172686.1 NP_001166157.1 Accepted alive Link to Nucleotide Sequence:NM_001172686.1Link to Protein Sequence:NP_001166157.1Re-query CCDS DB by Nucleotide ID:NM_001172686Re-query CCDS DB by Protein ID:NP_001166157Link to BLAST:NP_001166157.1

Chromosomal Locations for CCDS 48844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73372055 73372063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73374751 73375704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAGCCAGATGCAGGGCACCACAGAAAGGAATCAAACTGCCATCTCCCAGTTCCTCCTCCTGGGCCTGC
CCATCCCCACAGAGCATCAACACCTGTTCTATGCCCTGTTCCTGGCCATGTACCTCACCACCGTCCTGGG
GAACCTCATCATCATCATCCTTATTCATCTGGACTCCCATCTCCACACACCCATGTATTCTTTCCTCAGC
AATTTGTCCTTCTCTGATCTCTGCTTTTCATCTGTCACAATGCCCAAATTGCTGCAGAACATGCAGAGCC
AGGATCCATCAATTCCCTATGCAGGCTGCCTGGCACAAATGTACTTTTTCCTGTTTTTTGCAGACCTTGA
AAGCTTCCTCCTTGTGGCCATGGCCTATGACCGCTATGTGGCTATCTGCTTCCCCCTTCATTACATGAGC
ATCATGAGCCCCAGGCTCTGTGTGAGTCTGGTGCTGCTGTCCTGGGTGCTGACCACCTTCCATGCCATGC
TGCATACCCTGCTCATGGCCAGATTGTCATTCTGTGAGGACAATGTGATCCCCCACTTTTTCTGTGACAT
GTCTGCTCTGCTGAAGCTGTCCTGCTCTGACACCTATGTTAATGAATTGGTGATATTTGTCATGGGAAGC
CTGATCCTTGTCATTCCATTTGTGCTCATCCTTGTGTCCTATGCACGAATTGTGTCCTCCATTCTCAAGG
TCCCGTCTGCTCGAGGCATCCGTAAAGCCTTCTCCACCTGTGGGTCCCACCTGTCTGTGGTGTCACTGTT
CTATGGAACAGTCATTGGTCTGTACTTATGTCCATCAGCTGATAACTCTACTGTGAAGGAAACTGTCATG
GCCATGATGTACACAGTGGTGACTCCCATGCTGAACCCCTTCATCTACAGCCTGAGGAACAGAGACATGA
AGGGGGCCCTAATTAGTGTTCTTTGCAAGAAGAAAATTCTTTTCTGTCTATGA

Translation (320 aa):
MSQMQGTTERNQTAISQFLLLGLPIPTEHQHLFYALFLAMYLTTVLGNLIIIILIHLDSHLHTPMYSFLS
NLSFSDLCFSSVTMPKLLQNMQSQDPSIPYAGCLAQMYFFLFFADLESFLLVAMAYDRYVAICFPLHYMS
IMSPRLCVSLVLLSWVLTTFHAMLHTLLMARLSFCEDNVIPHFFCDMSALLKLSCSDTYVNELVIFVMGS
LILVIPFVLILVSYARIVSSILKVPSARGIRKAFSTCGSHLSVVSLFYGTVIGLYLCPSADNSTVKETVM
AMMYTVVTPMLNPFIYSLRNRDMKGALISVLCKKKILFCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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